View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15808_low_2 (Length: 493)
Name: NF15808_low_2
Description: NF15808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15808_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 11 - 476
Target Start/End: Complemental strand, 48824054 - 48823593
Alignment:
| Q |
11 |
gagatgaagacgagtcaagatagagagagttttaaggatttatgggcgaggacctttgctaggcgagcaattccaaagagttatagggagaaaggctaca |
110 |
Q |
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| T |
48824054 |
gagatgaagacgagtcaagatagagag--ttttaaggatttatgggcgaggacctttgctaggcgagcaattccaaagagttatagggagaaaggctaca |
48823957 |
T |
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| Q |
111 |
acacactcgttgagcaagcaacacttcgttccgcaaagtaaggcggtttaataacttttggagatcagctatgctttttcccccacttgaaaaaacctca |
210 |
Q |
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| T |
48823956 |
acacactcgttgagcaagcaacacttcgttccgcaaagtaaggcggtttaataacttttggagatcagctatgctttttcccccacttgaaaaaacctca |
48823857 |
T |
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| Q |
211 |
agagcaaacctgcactttttgtacttatataaataagattgtaattagaattttagatatacttttgatagctaagtctcattttagagggatagagagg |
310 |
Q |
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| T |
48823856 |
agagcgaacctgcactttttgtacttatataaataagattgtaattagaattttagatatatttttgatagctaagtctcattttagagggatagggagg |
48823757 |
T |
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| Q |
311 |
catagagtgtgagaagttgtgtatcactgttggagtttattagagcttggattcaagctttttgatgttcctccttcgttattcttcttctctctacttg |
410 |
Q |
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| T |
48823756 |
catagagtgtgagaagttgtgtatcactgttggagtttattagagcttggattcaagctttttgatgttcctccttcgttattcttcttctctctacttg |
48823657 |
T |
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| Q |
411 |
ttacctcactcgtgggtaaccaatctctctttgtgtttgggatcagatgaaggtagataggatttc |
476 |
Q |
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| T |
48823656 |
ttacctcactcgtgggtaaccaatctctc--tgtgtttgggattagatgaaggtagataggatttc |
48823593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 473
Target Start/End: Original strand, 9252834 - 9253072
Alignment:
| Q |
221 |
tgcactttttgtacttatataaataagattgtaattagaattttagatatacttttgatagctaagtctcattttagagggatagagaggcatagagtgt |
320 |
Q |
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| T |
9252834 |
tgcacattttgtacttgtataaataggattgtgatcagattttaaaatatatttttgatacctaagtctcgttttagag------atagg----gagtgt |
9252923 |
T |
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| Q |
321 |
gagaagttgtgtatcactgttggagtttattagagcttggattcaagctttttgatgttcctccttcgttattcttcttctctctacttgttacctcact |
420 |
Q |
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| T |
9252924 |
gagaagttgtgt-tcaccattggaagctattgaagcttagattcaagcttgttgatgttcctccttcatcattctaattctatttgctagttacctcaat |
9253022 |
T |
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| Q |
421 |
cgtgggtaaccaatctctctttgtgtttgggatcagatgaaggtagataggat |
473 |
Q |
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| T |
9253023 |
catggctaactaatctctc---atgtttgggattagatgtaggtagctaggat |
9253072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Complemental strand, 9499428 - 9499383
Alignment:
| Q |
353 |
gagcttggattcaagctttttgatgttcctccttcgttattcttct |
398 |
Q |
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| T |
9499428 |
gagcttggattcaagcttgttgatgttcctccatcatcattcttct |
9499383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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