View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15808_low_3 (Length: 485)
Name: NF15808_low_3
Description: NF15808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15808_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 31 - 249
Target Start/End: Original strand, 10192846 - 10193064
Alignment:
| Q |
31 |
gagctcaattaaccttctgtatgcagaaatatctggcactaaatctccatgaacatgatttagagaaattttaggatccattggaatgagagaaggtttg |
130 |
Q |
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| T |
10192846 |
gagctcaattaacattctgtatgcagaaatatctggcactaaatctccatcaacatgatttagagaaattttaggatccattggaatgagagaaggtttg |
10192945 |
T |
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| Q |
131 |
caggatataaagccagtgtcctgtagaaacttaaggacacatttcctttgacatagatgaatacaaaaagtagtgcagtcacctcttattttgagtttga |
230 |
Q |
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| T |
10192946 |
caggatataaagccagtgtcctgtagaaacttaaggacacatttcctttgacatagatgaatacaaaaagtagtgcagtcacctcttattttgagtttga |
10193045 |
T |
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| Q |
231 |
agtttagttgtaacatgta |
249 |
Q |
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| T |
10193046 |
agttttgttgtaacatgta |
10193064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 243 - 340
Target Start/End: Original strand, 10193091 - 10193184
Alignment:
| Q |
243 |
acatgtaccaaaaggatgattaaagaaagaataacctaatctaatagagaaaagagagtggtcagcacttgaaagccaaacttagcaatggtggtgct |
340 |
Q |
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| T |
10193091 |
acatgtaccaaaaggatgattaaag----aataacctaatctaatagagaaaagagggtggtcagcacttgaaagccaaacttagcaatggtggtgct |
10193184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 417 - 470
Target Start/End: Original strand, 10193803 - 10193857
Alignment:
| Q |
417 |
gttgcagtgacagatacgaagg-ttgggatggtgttgctgttttcattgtgccat |
470 |
Q |
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| T |
10193803 |
gttgcagtgacagatacgaagggttgggatggtgttgctgttttcattgtgccat |
10193857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 10193578 - 10193610
Alignment:
| Q |
388 |
ttgacaactcgatcggatcatcgagttgagttg |
420 |
Q |
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| T |
10193578 |
ttgacaactcgatcggatcatcgagttgagttg |
10193610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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