View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15808_low_5 (Length: 424)
Name: NF15808_low_5
Description: NF15808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15808_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 27474881 - 27475128
Alignment:
| Q |
11 |
cataggatgggaaaagtaatagtctaaatttaaagaaagaatgacccctaattctcaaaaggtcatgaacataaaatggtagggaaattggattttaaac |
110 |
Q |
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| T |
27474881 |
cataggatgggaaaaataatagtctaaatttaaagaaagaataacccataattctcaaaaggtcatgaacataaaatggtaagcaaattggattttaaac |
27474980 |
T |
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| Q |
111 |
aaaagatcatggttatttgcataactcacaaagatttaacaagaaaaggtgggaaatgatgtgttcatgggtaattactacaaagttttggacttgtgat |
210 |
Q |
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| T |
27474981 |
aaaagatcatggttatttgcataactcacaaagatttaacaagaaaaggtgagaaatgatgtgttcatgagtaattactacaaagttttggacttgtgat |
27475080 |
T |
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| Q |
211 |
catttacatattttgtaagtaatggaaatcaaattcaaagaaagagta |
258 |
Q |
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| T |
27475081 |
catttacatattttgtaagtaatggaaatcaaattcaaagaaagagta |
27475128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 8748526 - 8748449
Alignment:
| Q |
251 |
aaagagtattggctgttcactacaattacatttctaccctcgctttagtttttatttttcatttgtaaataattgtta |
328 |
Q |
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| T |
8748526 |
aaagagtactgactgctcattaaaattacgtttttaccctggctttagtttttatttttcatttgtaaataattgtta |
8748449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 42280365 - 42280332
Alignment:
| Q |
11 |
cataggatgggaaaagtaatagtctaaatttaaa |
44 |
Q |
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| T |
42280365 |
cataggatgggaaaagtaatagtcttaatttaaa |
42280332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 253 - 409
Target Start/End: Complemental strand, 47333794 - 47333635
Alignment:
| Q |
253 |
agagtattggctgttcactacaattacatttctaccctcgctttagtttttatttttcatttgtaaataattgtt----acacgtacgttaacactgtac |
348 |
Q |
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||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
47333794 |
agagtattgactgttcacaacaattacgtttctaccctcgctttagtttttatttttcatttgtaaattattgttacacacacgtacgttaacactgtac |
47333695 |
T |
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| Q |
349 |
caatttgtctaatgcaaggagtcacgtactacgttttaatatttttctgagggcaagtgct |
409 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| |
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| T |
47333694 |
cagtttgtctaatgcaaggagtcacatactacgttttaatatttttc-gagggaaagtgct |
47333635 |
T |
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