View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15808_low_6 (Length: 404)
Name: NF15808_low_6
Description: NF15808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15808_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 7689216 - 7688842
Alignment:
| Q |
18 |
gggataagagcacaattctcggtttatttgaatgacatgtatcaatatccttctcctgttgaagaaggcatacttcaagtacaaatcttgagagataatg |
117 |
Q |
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| T |
7689216 |
gggataagagcacaattctcggtttatttgaatgacatgtatcaatatccttctcctgttgaagaaggcatacttcaagtacaaatcttaagagatgatg |
7689117 |
T |
|
| Q |
118 |
actcctacagtgtttcgccgatcatatatcccatgttaaacaaaactggtatttcaaaggataaactctttttgattacattcctttctacatttgataa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7689116 |
actcctacagtgtttcgccgatcatatatcccatgttaaacaaaactggtatttcaaaggataaactctttttgattacattcctttctacatttgataa |
7689017 |
T |
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| Q |
218 |
ttgtattttgcttgttataatatacattggtattgatattagggagtagagtggactcaggagtgagatatgatggcatcggtcgcatggaaatcgccac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7689016 |
ttgtattttgcttgttataatatacattggtattgatattagggagtagagtggactcaggagtgagatatgatggcatcggtcgcatggaaatcgccac |
7688917 |
T |
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| Q |
318 |
gtcaccttcaccttcagtagagctaggcaacaatgtgaggaatacaaacataactttttggtgtacaatgttcat |
392 |
Q |
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| T |
7688916 |
gtcaccttcaccttcagtagagctaggcaacaatgtgaggaatacaaacataactttttggtgtacaatgttcat |
7688842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 13888355 - 13887981
Alignment:
| Q |
16 |
cagggataagagcacaattctcggtttatttgaatgacatgtatcaatatccttctcctgttgaagaaggcatacttcaagtacaaatcttgagagataa |
115 |
Q |
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| T |
13888355 |
cagggataagggaagaattctttgtttatttgaatgacatgtatcaatatccttctcccgttgaagaaggcatacttcaagtacagatcttaagagataa |
13888256 |
T |
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| Q |
116 |
tgactcctacagtgtttcgccgatcatatatcccatgttaaacaaaactggtatttcaaaggataaactctttttgattacattcctttctacatttgat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||| |
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| T |
13888255 |
tgactcctacagtgtttcgccgatcatatatcccatgttaaacaaaactggtattgcaaaggataaactcatttttattacattctcttctacatttgat |
13888156 |
T |
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| Q |
216 |
aattgtattttgcttgttataatatacattggtattgatattagggagtagagtggactcaggagtgagatatgatggcatcggtcgcatggaaatcgcc |
315 |
Q |
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| T |
13888155 |
aattgtattttgcttgttata--atacattggtattgatagtagggagtagagtggacccacaagtgagatatgatggtatcggtcgcatggaaatcacc |
13888058 |
T |
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| Q |
316 |
acgtcaccttcaccttcagtagagctaggcaacaatgtgaggaatacaaacataactttttggtgtacaatgttcat |
392 |
Q |
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| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
13888057 |
ccatcatcttcaccttcagtagagctaggcaacaatgtgaggaatacaaacatagttttttggtgcacaatgttcat |
13887981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 14028480 - 14028106
Alignment:
| Q |
16 |
cagggataagagcacaattctcggtttatttgaatgacatgtatcaatatccttctcctgttgaagaaggcatacttcaagtacaaatcttgagagataa |
115 |
Q |
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|||||||||| | | |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
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| T |
14028480 |
cagggataagggaagaattctttgtttatttgaatgacatgtatcaatatccttctcccgttgaagaaggcatacttcaagtacagatcttaagagataa |
14028381 |
T |
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| Q |
116 |
tgactcctacagtgtttcgccgatcatatatcccatgttaaacaaaactggtatttcaaaggataaactctttttgattacattcctttctacatttgat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||| |
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| T |
14028380 |
tgactcctacagtgtttcgccgatcatatatcccatgttaaacaaaactggtattgcaaaggataaactcatttttattacattctcttctacatttgat |
14028281 |
T |
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| Q |
216 |
aattgtattttgcttgttataatatacattggtattgatattagggagtagagtggactcaggagtgagatatgatggcatcggtcgcatggaaatcgcc |
315 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||| || |
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| T |
14028280 |
aattgtattttgcttgttata--atacattggtattgatagtagggagtagagtggacccacaagtgagatatgatggtatcggtcgcatggaaatcacc |
14028183 |
T |
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| Q |
316 |
acgtcaccttcaccttcagtagagctaggcaacaatgtgaggaatacaaacataactttttggtgtacaatgttcat |
392 |
Q |
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| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
14028182 |
ccatcatcttcaccttcagtagagctaggcaacaatgtgaggaatacaaacatagttttttggtgcacaatgttcat |
14028106 |
T |
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