View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15809_high_2 (Length: 288)
Name: NF15809_high_2
Description: NF15809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15809_high_2 |
 | |
|
| [»] scaffold0312 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 924411 - 924669
Alignment:
| Q |
18 |
ccatccaatggattatccatatgcagtgttttattgtcacaaactacgtgcaactaaagtttactatttgcctatggaaggtgttgatggaaccaaagtt |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
924411 |
ccatccaatggattatccatatacagtgttttattgtcacaaactacgtgcaactaaagtttactatttgcctatggaaggtgttgatggaaccaaagtt |
924510 |
T |
|
| Q |
118 |
aaagctgttgctatttgccactctgatacttcacaatggagtcctaaacatttggcttttcaagtactcaaaattcaacctggaactgttccagtttgcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
924511 |
aaagctgttgctatttgccactctgatacttcacaatggagtcctaaacatttggcttttcaagtactcaaaattcaacctggaactgttccagtttgcc |
924610 |
T |
|
| Q |
218 |
acttcttaccacagggtcatgttgtttggttttcaaaataaaaccaccaatttcatctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
924611 |
acttcttaccacagggtcatgttgtttggttttcaaaataaaaccaccaatttcatctc |
924669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 916372 - 916611
Alignment:
| Q |
30 |
ttatccatatgcagtgttttattgtcacaaactacgtgcaactaaagtttactatttgcctatggaaggtgttgatggaaccaaagttaaagctgttgct |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |||| |
|
|
| T |
916372 |
ttatccatatgcagtgttttattgtcacaaattacgggcaactaaagtttactatttgcctatggaaggtattgatggtaccaaagttaaaactgctgct |
916471 |
T |
|
| Q |
130 |
atttgccactctgatacttcacaatggagtcctaaacatttggcttttcaagtactcaaaattcaacctggaactgttccagtttgccacttcttaccac |
229 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
916472 |
atttgccacaatgatacttcacaatggagtcccaagcatttggcttttcatgtactcaaggttcaacctggaactgttccagtttgccacttcctacaac |
916571 |
T |
|
| Q |
230 |
agggtcatgttgtttggttttcaaaataaaaccaccaatt |
269 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
916572 |
atggtcatgttatttggttttcaaaataaaaccaccaatt |
916611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 37 - 275
Target Start/End: Original strand, 909897 - 910135
Alignment:
| Q |
37 |
tatgcagtgttttattgtcacaaactacgtgcaactaaagtttactatttgcctatggaaggtgttgatggaaccaaagttaaagctgttgctatttgcc |
136 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||||||||| | ||||| ||||||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
909897 |
tatgcagttttttactgtcacaaaacagatgcaactaaagtttactctgtgcctttggaaggtgctgatggaagtagagttaaagctgttgctatttgcc |
909996 |
T |
|
| Q |
137 |
actctgatacttcacaatggagtcctaaacatttggcttttcaagtactcaaaattcaacctggaactgttccagtttgccacttcttaccacagggtca |
236 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||| |||||| |||||||||||||| || ||| ||||||||| |
|
|
| T |
909997 |
actctgatacttcacaatggagccttaaacatttggcttttcaagtgctcaaagttcaacaaggaacttttccagtttgccacatcctacaacagggtca |
910096 |
T |
|
| Q |
237 |
tgttgtttggttttcaaaataaaaccaccaatttcatct |
275 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| ||||| |
|
|
| T |
910097 |
agttgtttggttttccaagtaaaaacaccaattccatct |
910135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 68 - 251
Target Start/End: Original strand, 936684 - 936867
Alignment:
| Q |
68 |
caactaaagtttactatttgcctatggaaggtgttgatggaaccaaagttaaagctgttgctatttgccactctgatacttcacaatggagtcctaaaca |
167 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||||||| | |||||||||||||||| | || ||| |||||||||||||||||| ||||||||| |
|
|
| T |
936684 |
caactaaagtttactctgtgcctttggaaggtgttgatggaagtagagttaaagctgttgctgtgtgtcacactgatacttcacaatggaatcctaaaca |
936783 |
T |
|
| Q |
168 |
tttggcttttcaagtactcaaaattcaacctggaactgttccagtttgccacttcttaccacagggtcatgttgtttggttttc |
251 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| | || |||| ||||||||||||| |||| |
|
|
| T |
936784 |
tttggcttttcaagtgctcaatgttcaacctggaactgttccagtttgtcacttccttcctcaggatcatgttgtttgggtttc |
936867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 246
Target Start/End: Complemental strand, 419705 - 419496
Alignment:
| Q |
37 |
tatgcagtgttttattgtcacaaactacgtgcaactaaagtttactatttgcctatggaaggtgttgatggaaccaaagttaaagctgttgctatttgcc |
136 |
Q |
| |
|
|||||||||||||| ||||||||| | | ||||||||| ||||| | ||||| |||| |||| |||||||| || |||||||||| ||||| | || | |
|
|
| T |
419705 |
tatgcagtgttttactgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtc |
419606 |
T |
|
| Q |
137 |
actctgatacttcacaatggagtcctaaacatttggcttttcaagtactcaaaattcaacctggaactgttccagtttgccacttcttaccacagggtca |
236 |
Q |
| |
|
|| ||||||| ||| |||||| || ||||||||||| ||||||||||||||| |||||||||| |||||||||||||| ||| || |||| ||| ||| |
|
|
| T |
419605 |
acactgatacatcagaatggaacccaaaacatttggcatttcaagtactcaaagttcaacctgggactgttccagtttgtcacctcctacctgaggatca |
419506 |
T |
|
| Q |
237 |
tgttgtttgg |
246 |
Q |
| |
|
|||||||||| |
|
|
| T |
419505 |
tgttgtttgg |
419496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 246
Target Start/End: Original strand, 975456 - 975665
Alignment:
| Q |
37 |
tatgcagtgttttattgtcacaaactacgtgcaactaaagtttactatttgcctatggaaggtgttgatggaaccaaagttaaagctgttgctatttgcc |
136 |
Q |
| |
|
|||||||||||||| ||||||||| | | ||||||||| ||||| | ||||| |||| |||| |||||||| || |||||||||| ||||| | || | |
|
|
| T |
975456 |
tatgcagtgttttactgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtc |
975555 |
T |
|
| Q |
137 |
actctgatacttcacaatggagtcctaaacatttggcttttcaagtactcaaaattcaacctggaactgttccagtttgccacttcttaccacagggtca |
236 |
Q |
| |
|
|| ||||||| ||| |||||| || ||||||||||| ||||||||||||||| |||||||||| |||||||||||||| ||| || |||| ||| ||| |
|
|
| T |
975556 |
acactgatacatcagaatggaacccaaaacatttggcatttcaagtactcaaagttcaacctgggactgttccagtttgtcacctcctacctgaggatca |
975655 |
T |
|
| Q |
237 |
tgttgtttgg |
246 |
Q |
| |
|
|||||||||| |
|
|
| T |
975656 |
tgttgtttgg |
975665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 74 - 251
Target Start/End: Original strand, 949599 - 949776
Alignment:
| Q |
74 |
aagtttactatttgcctatggaaggtgttgatggaaccaaagttaaagctgttgctatttgccactctgatacttcacaatggagtcctaaacatttggc |
173 |
Q |
| |
|
||||||||| | |||| |||||||||||||||||| || |||||| || ||| | |||| ||| ||||||| ||| |||||| |||||||||||||| |
|
|
| T |
949599 |
aagtttactctgtgcccttggaaggtgttgatggaaacatggttaaaactattgttgtttgtcacactgatacatcagaatggaaccctaaacatttggc |
949698 |
T |
|
| Q |
174 |
ttttcaagtactcaaaattcaacctggaactgttccagtttgccacttcttaccacagggtcatgttgtttggttttc |
251 |
Q |
| |
|
||||||||| |||||| ||||||| || |||||||| |||| ||| || | ||||||| ||||||||||||| |||| |
|
|
| T |
949699 |
ttttcaagtgctcaaagttcaaccagggactgttcctatttgtcacatcctcccacaggatcatgttgtttgggtttc |
949776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 251
Target Start/End: Original strand, 942604 - 942787
Alignment:
| Q |
68 |
caactaaagtttactatttgcctatggaaggtgttgatggaaccaaagttaaagctgttgctatttgccactctgatacttcacaatggagtcctaaaca |
167 |
Q |
| |
|
||||| ||||||||| | |||| |||||||||||||||||| || |||||| || ||||| |||| ||| ||||||| ||| |||||| ||||||||| |
|
|
| T |
942604 |
caactgaagtttactctgtgccattggaaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcagaatggaatcctaaaca |
942703 |
T |
|
| Q |
168 |
tttggcttttcaagtactcaaaattcaacctggaactgttccagtttgccacttcttaccacagggtcatgttgtttggttttc |
251 |
Q |
| |
|
|||||||||| | || || ||| ||||||| || |||||||| |||| ||| || | ||||||| ||||||||||||| |||| |
|
|
| T |
942704 |
tttggctttttatgtgcttaaagttcaaccagggactgttcctatttgtcacatcctcccacaggatcatgttgtttgggtttc |
942787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 251
Target Start/End: Original strand, 960565 - 960748
Alignment:
| Q |
68 |
caactaaagtttactatttgcctatggaaggtgttgatggaaccaaagttaaagctgttgctatttgccactctgatacttcacaatggagtcctaaaca |
167 |
Q |
| |
|
||||| ||||||||| | |||| |||||||||||||||||| || |||||| || ||||| |||| ||| ||||||| ||| |||||| ||||||||| |
|
|
| T |
960565 |
caactgaagtttactctgtgccattggaaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcagaatggaatcctaaaca |
960664 |
T |
|
| Q |
168 |
tttggcttttcaagtactcaaaattcaacctggaactgttccagtttgccacttcttaccacagggtcatgttgtttggttttc |
251 |
Q |
| |
|
|||||||||| | || || ||| ||||||| || |||||||| |||| ||| || | ||||||| ||||||||||||| |||| |
|
|
| T |
960665 |
tttggctttttatgtgcttaaagttcaaccagggactgttcctatttgtcacatcctcccacaggatcatgttgtttgggtttc |
960748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 251
Target Start/End: Original strand, 971874 - 972057
Alignment:
| Q |
68 |
caactaaagtttactatttgcctatggaaggtgttgatggaaccaaagttaaagctgttgctatttgccactctgatacttcacaatggagtcctaaaca |
167 |
Q |
| |
|
||||| ||||||||| | |||| |||||||||||||||||| || |||||| || ||||| |||| ||| ||||||| ||| |||||| ||||||||| |
|
|
| T |
971874 |
caactgaagtttactctgtgccattggaaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcagaatggaatcctaaaca |
971973 |
T |
|
| Q |
168 |
tttggcttttcaagtactcaaaattcaacctggaactgttccagtttgccacttcttaccacagggtcatgttgtttggttttc |
251 |
Q |
| |
|
|||||||||| | || || ||| ||||||| || |||||||| |||| ||| || | ||||||| ||||||||||||| |||| |
|
|
| T |
971974 |
tttggctttttatgtgcttaaagttcaaccagggactgttcctatttgtcacatcctcccacaggatcatgttgtttgggtttc |
972057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 246
Target Start/End: Original strand, 10866 - 11075
Alignment:
| Q |
37 |
tatgcagtgttttattgtcacaaactacgtgcaactaaagtttactatttgcctatggaaggtgttgatggaaccaaagttaaagctgttgctatttgcc |
136 |
Q |
| |
|
|||||||||||||| ||||||||| | | ||||||||| ||||| | ||||| |||| |||| |||||||| || |||||||||| ||||| | || | |
|
|
| T |
10866 |
tatgcagtgttttactgtcacaaaacagatacaactaaagcttactctgtgcctttggagggtgctgatggaagcagagttaaagctattgctgtgtgtc |
10965 |
T |
|
| Q |
137 |
actctgatacttcacaatggagtcctaaacatttggcttttcaagtactcaaaattcaacctggaactgttccagtttgccacttcttaccacagggtca |
236 |
Q |
| |
|
|| ||||||| ||| |||||| || ||||||||||| ||||||||||||||| |||||||||| |||||||||||||| ||| || |||| ||| ||| |
|
|
| T |
10966 |
acactgatacatcagaatggaacccaaaacatttggcatttcaagtactcaaagttcaacctgggactgttccagtttgtcacctcctacctgaggatca |
11065 |
T |
|
| Q |
237 |
tgttgtttgg |
246 |
Q |
| |
|
|||||||||| |
|
|
| T |
11066 |
tgttgtttgg |
11075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University