View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15809_low_5 (Length: 212)
Name: NF15809_low_5
Description: NF15809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15809_low_5 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 12611145 - 12610942
Alignment:
| Q |
9 |
cgaagaatatgcacgatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
108 |
Q |
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| T |
12611145 |
cgaaaaatatgcacaatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
12611046 |
T |
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| Q |
109 |
tgcaacaagggtcacccgtcaacatcactaaggttgtagtttcatcaacatttggtatcattacaaaggccgcgtttggcagcaaaggcaaaggcagaga |
208 |
Q |
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| T |
12611045 |
cgcaacaagggtcgcccgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagaga |
12610946 |
T |
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| Q |
209 |
agag |
212 |
Q |
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|||| |
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| T |
12610945 |
agag |
12610942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 15884903 - 15885095
Alignment:
| Q |
9 |
cgaagaatatgcacgatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
108 |
Q |
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| T |
15884903 |
cgaaaaatatgcacaatggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggtt |
15885002 |
T |
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| Q |
109 |
tgcaacaagggtcacccgtcaacatcactaaggttgtagtttcatcaacatttggtatcattacaaaggccgcgtttggcagcaaaggcaaag |
201 |
Q |
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| T |
15885003 |
cgaagcaagggtcatccatcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaag |
15885095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 12638145 - 12638017
Alignment:
| Q |
9 |
cgaagaatatgcacgatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
108 |
Q |
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|||| ||||||||| || || ||| | || ||||| ||||||||||| || | || ||||||||||||||| | | ||||||| | |||| ||||||| |
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| T |
12638145 |
cgaaaaatatgcacaattgaacttcttacgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgatt |
12638046 |
T |
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| Q |
109 |
tgcaacaagggtcacccgtcaacatcact |
137 |
Q |
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| T |
12638045 |
cacaacaaggatcacccatcaacatcact |
12638017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 63224 - 63150
Alignment:
| Q |
63 |
ccaataagagaagaagagcttaacaatctcgtaaaaaagattgatttgcaacaagggtcacccgtcaacatcact |
137 |
Q |
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| T |
63224 |
ccaataagagaagaagagctctccaatctcatcaaaaggattgatttgcaacaaggattgcctgtcaacatcact |
63150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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