View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1580_high_1 (Length: 652)
Name: NF1580_high_1
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_high_1 |
 | |
|
| [»] scaffold0941 (1 HSPs) |
| | |
|
| [»] scaffold0098 (2 HSPs) |
| | |
|
| [»] scaffold0597 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0941 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 18 - 641
Target Start/End: Complemental strand, 1805 - 1182
Alignment:
| Q |
18 |
catcaacactaattaagtttggggaaagatgaattggacataaacaccagagattagggattaaagagtttctatcattaacacaaaacactttaagacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1805 |
catcaacactaattaagtttggggaaagatgaattgaacataaacaccagagattagggattaaagagtttctatcattaacacaaaacactttaagacc |
1706 |
T |
|
| Q |
118 |
tagattaagaagccatctaggtgacaaatcagacacaagcatccaaggttcagaaatgaaacaaacatcaggtttatatttagataatagttttttaaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1705 |
tagattaagaagccatctaggtgacaaatcagacacaagcatccaaggttcagaaatgaaacaaacatcaggtttatatttagataatagttttttaaga |
1606 |
T |
|
| Q |
218 |
gctaattttgtaggagaattagctaaacctcttaagttccaataaaggcacttcatctaaaaggcttgggagcaccaacctttgatcttgtgatataagg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1605 |
gctaattttgtaggagaattagctaaacctcttaagttccaataaaggcacttcatctaaaaggcttgggagcaccaacctttgatcttgtgatataagg |
1506 |
T |
|
| Q |
318 |
ctttgattttgaactcttcagcaatgcagctctcttttcagctttcttagnnnnnnnacttgtcaccatctgaaatccatgctcatcaacttctggaact |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1505 |
ctttgattttgaactcttcagcaatgcagctctcttttcagctttcttagttgttttacttgtcaccatctgaaattcatgctcatcaacttctggaact |
1406 |
T |
|
| Q |
418 |
gaattatctgcttgtttagacatggcttgctgtgctggtaatttaccatacaagtttctatttggactgctgggattgcctgcatcagtttgttgtgcat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1405 |
gaattatctgcttgtttagacatggcttgctgtgctggtaatttaccatacaagttcctatttggactgctgggattgcctgcatcagtttgttgtgcat |
1306 |
T |
|
| Q |
518 |
tatcatcaagtaaatcatcagttggttccatctcctcaagatttgcccaagaatcttttagaaagtttatgtctttttgcacaatttcctgtacttcatc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1305 |
tatcatcaagtaaatcatcagttggttccatctcctcaagatttgcccaagaatcttttagaaagtttatgtctttttgcacaatttcctgtacttcatc |
1206 |
T |
|
| Q |
618 |
ttcatagtctgaactgtcattctt |
641 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1205 |
ttcatagtctgaactgtcattctt |
1182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 130 - 641
Target Start/End: Original strand, 36425 - 36948
Alignment:
| Q |
130 |
ccatctaggtgacaaatcagacacaagcatccaaggttcagaaatgaaacaaacatcaggtttatatttagataatagttttttaagagctaattttgta |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
36425 |
ccatctaggtgacaaatcagacacaagcatccagggttcataaatgaaacaaacatcaggtttatatgtaaataatagttttttaagagctaattttgta |
36524 |
T |
|
| Q |
230 |
ggagaattagctaaacctcttaagttccaataaaggcacttcatctaaaaggcttgggagcaccaacctttgatcttgtgatataaggctttgattttga |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36525 |
ggagaattagctaaacctcttaagttccaataaatgcacttcatataaaatgcttgggagcacgaacctttgatcttgtgatataaggctttgattttga |
36624 |
T |
|
| Q |
330 |
actcttcagcaatgcagctctcttttcagctttcttagnnnnnnnacttgtcaccatctgaaatccatgctcatcaacttctggaactgaattatctgct |
429 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36625 |
actcttcaacaatgcagctctcttttcagctttcttagttgttttacttgtcaccatctgaaatccatgctcatcaacttctggaactgaattatctgct |
36724 |
T |
|
| Q |
430 |
tgtttagacatggcttgctgtgctggtaatttaccatacaagtttctatttgga------------ctgctgggattgcctgcatcagtttgttgtgcat |
517 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||| |||||||||| || |||||||||||| |
|
|
| T |
36725 |
tgtttagacatggcttgctgtgctagtaatttaccagacaagtttctatttagaacagtgacaaggctgctggaattgcctgcaacaatttgttgtgcat |
36824 |
T |
|
| Q |
518 |
tatcatcaagtaaatcatcagttggttccatctcctcaagatttgcccaagaatcttttagaaagtttatgtctttttgcacaatttcctgtacttcatc |
617 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
36825 |
tatcatcaagtaagtcatcagttggttccatctcctcaagatttgcccaagaatcttttagaaagttgatgtctttttgcacaatttcctgaacttcatc |
36924 |
T |
|
| Q |
618 |
ttcatagtctgaactgtcattctt |
641 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
36925 |
ttcattgtctgaactgtcattctt |
36948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 33416 - 33533
Alignment:
| Q |
18 |
catcaacactaattaagtttggggaaagatgaattggacataaacaccagagattagggattaaagagtttctatcattaacacaaaacactttaagacc |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33416 |
catcaacactaattaagttcggggaaagattaattgaacatagacaccagagattagggattaaagagtttctatcattaacacaaaacactttgagacc |
33515 |
T |
|
| Q |
118 |
tagattaagaagccatct |
135 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
33516 |
tagattataaagccatct |
33533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 38 - 471
Target Start/End: Original strand, 15090689 - 15091122
Alignment:
| Q |
38 |
ggggaaagatgaattggacataaacaccagagattagggattaaagagtttctatcattaacacaaaacactttaagacctagattaagaagccatctag |
137 |
Q |
| |
|
||||||| |||||| | ||| | |||||| |||||||| || ||||| || |||| | |||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
15090689 |
ggggaaatatgaatggaacacagacaccaaagattaggaatcaaagaattcctattggtgacacaaaacactctgagacctagattttgaagccatctag |
15090788 |
T |
|
| Q |
138 |
gtgacaaatcagacacaagcatccaaggttcagaaatgaaacaaacatcaggtttatatttagataatagttttttaagagctaattttgtaggagaatt |
237 |
Q |
| |
|
|| | || |||||| |||||||| |||||||| || || |||| ||| ||||| ||||||||||||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
15090789 |
aagatagattagacaccagcatccagggttcagatataaagcaaatatctggtttgtatttagataataattttttaagagctaatttcgtaggtgaatt |
15090888 |
T |
|
| Q |
238 |
agctaaacctcttaagttccaataaaggcacttcatctaaaaggcttgggagcaccaacctttgatcttgtgatataaggctttgattttgaactcttca |
337 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| | |||||| |
|
|
| T |
15090889 |
agctaaacctcttaaattccagtaaaagcacttcatctgaaaggtttgggggcaccaacctttgatcttgtgatataaggcttgttctttggattcttca |
15090988 |
T |
|
| Q |
338 |
gcaatgcagctctcttttcagctttcttagnnnnnnnacttgtcaccatctgaaatccatgctcatcaacttctggaactgaattatctgcttgtttaga |
437 |
Q |
| |
|
|| | ||| |||| |||| | | |||| |||||||||||| ||||| || || ||||||||||| |||| ||| | |||||||| |||||| |
|
|
| T |
15090989 |
tcatagttgctttcttctcagttcttttagttgatttacttgtcaccatttgaaagccctggtcatcaacttcaggaattgagtcatctgcttctttaga |
15091088 |
T |
|
| Q |
438 |
catggcttgctgtgctggtaatttaccatacaag |
471 |
Q |
| |
|
||| ||||||| | ||||| |||||||||||| |
|
|
| T |
15091089 |
catttcttgctgcacaggtaacttaccatacaag |
15091122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 217 - 335
Target Start/End: Original strand, 20970007 - 20970125
Alignment:
| Q |
217 |
agctaattttgtaggagaattagctaaacctcttaagttccaataaaggcacttcatctaaaaggcttgggagcaccaacctttgatcttgtgatataag |
316 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||| | ||| ||||| ||||||||||||| | |||| ||||| |
|
|
| T |
20970007 |
agctaattttttaggagaattagctaaacctcttaggttccaataaaaacacttcatctgacaggtttgggtttaccaacctttgatatggtgagataag |
20970106 |
T |
|
| Q |
317 |
gctttgattttgaactctt |
335 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
20970107 |
gttatgattttgaactctt |
20970125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 30411427 - 30411343
Alignment:
| Q |
217 |
agctaattttgtaggagaattagctaaacctcttaagttccaataaaggcacttcatctaaaaggcttgggagcaccaacctttgatct |
305 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| ||||||||||| |||| |||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
30411427 |
agctaattttgtgggagtattagctaaacctctgaagttccaata---gcac-tcatctaaaaggtttgggaggaccaacctttgatct |
30411343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0597 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0597
Description:
Target: scaffold0597; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 303
Target Start/End: Complemental strand, 3821 - 3736
Alignment:
| Q |
218 |
gctaattttgtaggagaattagctaaacctcttaagttccaataaaggcacttcatctaaaaggcttgggagcaccaacctttgat |
303 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| | |||||||| ||||||||||| | ||||| ||| ||||||||||||||| |
|
|
| T |
3821 |
gctaattttgtgggagaattagccaaccctctaagattccaatataggcacttcatttgaaaggtctggatgcaccaacctttgat |
3736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 22166097 - 22166158
Alignment:
| Q |
212 |
ttaagagctaattttgtaggagaattagctaaacctcttaagttccaataaaggcacttcat |
273 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| || | |||||| |||| ||||||||| |
|
|
| T |
22166097 |
ttaagagctaattttatgggagaattagctaaacccctaaggttccagtaaaagcacttcat |
22166158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 140508 - 140556
Alignment:
| Q |
239 |
gctaaacctcttaagttccaataaaggcacttcatctaaaaggcttggg |
287 |
Q |
| |
|
||||| ||||||| ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
140508 |
gctaagcctcttaggttccaataaaggatcttcatctaaaaggtttggg |
140556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 49683 - 49731
Alignment:
| Q |
233 |
gaattagctaaacctcttaagttccaataaaggcacttcatctaaaagg |
281 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
49683 |
gaattagctaaaccccttatgttccaataaagtaccttcatctaaaagg |
49731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University