View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1580_high_12 (Length: 410)
Name: NF1580_high_12
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 17569390 - 17569156
Alignment:
| Q |
16 |
attacaaagtgatgtgaaacccctttaacacgcaatgtgtcagctcttaaaaggaagaacgaaacaaagagcctagttg-taaccccaaaaccaattgac |
114 |
Q |
| |
|
|||||||||||| || ||||||||||||||| ||| || |||| |||||| ||||||| ||||||||||||||| || || || ||||||||| |||| |
|
|
| T |
17569390 |
attacaaagtgaggtaaaacccctttaacacacaaagtaacagcccttaaagagaagaacaaaacaaagagcctagctgctagccgcaaaaccaactgac |
17569291 |
T |
|
| Q |
115 |
aggcacaacagcagccccaccctagccaaaacaacacatcaacagataagcccctaaatgctaaacagaccccaacaaaaagaaacactgccagcgaaaa |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
17569290 |
aggcacaacagcagccccacccgagccaaaacaacacatcaacagataaacccctaaatgctaaagagaccccaacaaaaagaaacattgccatcgaaaa |
17569191 |
T |
|
| Q |
215 |
gatggcaccactgtagcagagcagcatccgctcaa |
249 |
Q |
| |
|
|| ||||||| ||||||||||||| ||||||| |
|
|
| T |
17569190 |
gaacgcaccacaacagcagagcagcattcgctcaa |
17569156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 17569156 - 17569094
Alignment:
| Q |
306 |
actaccagcagaagcacatcaccccaccccatattcaaacaatctgcaggatcccaactccattcggg |
373 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17569156 |
actaccagcagaagcacatcacccca-----tattcaaacaatctgcaggatcccaacttcattcggg |
17569094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University