View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1580_high_2 (Length: 602)
Name: NF1580_high_2
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_high_2 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 113 - 602
Target Start/End: Original strand, 21261948 - 21262436
Alignment:
| Q |
113 |
gaatactcttgtaagtggtacctttctcccctataaggtgtgatgagacatgcctttaaaggaaatccagcatcacccaaataatattttcctataaaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
21261948 |
gaatactcttgtaagtggtacctttctcccctataaggtgtgatgagacatgcctttaaaggaaatcctgcatcacccaaataatattttccggtaaaaa |
21262047 |
T |
|
| Q |
213 |
taacgagtttattagtttggctaatctagatacttgtacaattatgttgtgnnnnnnnnnacctcgtggaactttaagaggatatgcacgtgtcaacgca |
312 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21262048 |
taatgagtttattagtttggctaatctagatacttgtacaattatgttgtgtttttttt-acatcgtggaactttaagaggatatgcacgtgtcaacgca |
21262146 |
T |
|
| Q |
313 |
ctcttaactattctagagtcggatgctgttccttcccatccaaccaagacataagtaaatttcaagtcaaatgtgcattcaaccaagacattttgtgtag |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
21262147 |
ctcttaactattctagagtcggatgctgttccttcccatccaaccaagacataagtaaatttcaagtcaaatgtgcatgcagccaagacattttgtgtag |
21262246 |
T |
|
| Q |
413 |
ggtaatcttttctaccacgatatctaggtgcaagatctgctggtactttaacacgcacatgtgtacaatcaattgctccaatatagtcctgacattcaat |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21262247 |
ggtaatcttttctaccacgatatctaggtgcaagatgtgctggtactttaacacgcacatgtgtacaatcaattgctccaatacagtcctgacattcaat |
21262346 |
T |
|
| Q |
513 |
taacatattaaaagtgcagaacacaacttattaatatttgtgtaagacacgatatctgtttaccttaaaatacgggtagaacctattgtt |
602 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21262347 |
taacatattaaaagtgcagaacataacttattaatatttgtgtaagacacgatttctgtttaccttaaaatacgggcagaacctattgtt |
21262436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 543
Target Start/End: Original strand, 19600 - 20140
Alignment:
| Q |
5 |
agaatcggaaatctctgcttcaacactccaaatgcacattcaatcgacattcgtaatgacgaatgtcgatggttgaataattcacgagggtttcgaggtg |
104 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||| || |||||||||| |||||| || || |||||||||||||||| |
|
|
| T |
19600 |
agaattggaaatctcttcttcaacactccaaatgcacattcaatagacattcttaacgatgaatgtcgattgttgaacaactcgcgagggtttcgaggtg |
19699 |
T |
|
| Q |
105 |
gattcctagaatactcttgtaagtggtacctttctcccctataaggtgtgatgagacatgcctttaaaggaaatccagcatcacccaaataatattttcc |
204 |
Q |
| |
|
|||| |||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||| | | |||||||||||| |
|
|
| T |
19700 |
gatttctagaatattcttgtaagtggtaacgttctcccctataaggtgtgatgagacatgcctttaaaggaaaccccgcatcagcaagataatattttcc |
19799 |
T |
|
| Q |
205 |
tata-aaaataacgagtttattagtttggctaatctagatacttgtacaattatgttgt-gnnnnnnnnnacctcgtggaactttaagaggatatgcacg |
302 |
Q |
| |
|
|||| ||||||| |||| ||||||||||| ||| ||| |||||| || || | |||| |||| | || |||||||||||||| ||| |
|
|
| T |
19800 |
tatagaaaataatgagtctattagtttggataagctacatacttataaaaagcttttgtattttttcgttaccttgcgggactttaagaggataccgacg |
19899 |
T |
|
| Q |
303 |
tgtcaacgcactcttaactattctagagtcggatgctgttccttcccatccaaccaagacataagtaaatttcaagtcaaatgtgcattcaaccaagaca |
402 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | | ||| |
|
|
| T |
19900 |
tgtcaaagcactctttactattcttgagtctgatgctgttccttcccatccaaccaagacatatgtaaatttcaagtcaaatgtgcacgcagcgagtaca |
19999 |
T |
|
| Q |
403 |
ttttgtgtagggtaatcttttctaccacgatatctaggtgcaagatctgctggtactttaacacgcacatgtgtacaatcaattgctccaatatagtcct |
502 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||| ||||| | ||||||||| ||||||||||| ||| | |||| |
|
|
| T |
20000 |
ttttgtgtagggtaatcttttctaccacggtatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcct |
20099 |
T |
|
| Q |
503 |
gacattcaattaacatattaaaagtgcagaacacaacttat |
543 |
Q |
| |
|
| |||||||||| | |||||||||| | |||| ||||||| |
|
|
| T |
20100 |
ggcattcaattatcccattaaaagtgtataacataacttat |
20140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 543
Target Start/End: Original strand, 22529463 - 22530003
Alignment:
| Q |
5 |
agaatcggaaatctctgcttcaacactccaaatgcacattcaatcgacattcgtaatgacgaatgtcgatggttgaataattcacgagggtttcgaggtg |
104 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||| || |||||||||| |||||| || || |||||||||||||||| |
|
|
| T |
22529463 |
agaattggaaatctcttcttcaacactccaaatgcacattcaatagacattcttaacgatgaatgtcgattgttgaacaactcgcgagggtttcgaggtg |
22529562 |
T |
|
| Q |
105 |
gattcctagaatactcttgtaagtggtacctttctcccctataaggtgtgatgagacatgcctttaaaggaaatccagcatcacccaaataatattttcc |
204 |
Q |
| |
|
|||| |||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||| | | |||||||||||| |
|
|
| T |
22529563 |
gatttctagaatattcttgtaagtggtaacgttctcccctataaggtgtgatgagacatgcctttaaaggaaaccccgcatcagcaagataatattttcc |
22529662 |
T |
|
| Q |
205 |
tata-aaaataacgagtttattagtttggctaatctagatacttgtacaattatgttgt-gnnnnnnnnnacctcgtggaactttaagaggatatgcacg |
302 |
Q |
| |
|
|||| ||||||| |||| ||||||||||| ||| ||| |||||| || || | |||| |||| | || |||||||||||||| ||| |
|
|
| T |
22529663 |
tatagaaaataatgagtctattagtttggataagctacatacttataaaaagcttttgtattttttcgttaccttgcgggactttaagaggataccgacg |
22529762 |
T |
|
| Q |
303 |
tgtcaacgcactcttaactattctagagtcggatgctgttccttcccatccaaccaagacataagtaaatttcaagtcaaatgtgcattcaaccaagaca |
402 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | | ||| |
|
|
| T |
22529763 |
tgtcaaagcactctttactattcttgagtctgatgctgttccttcccatccaaccaagacatatgtaaatttcaagtcaaatgtgcacgcagcgagtaca |
22529862 |
T |
|
| Q |
403 |
ttttgtgtagggtaatcttttctaccacgatatctaggtgcaagatctgctggtactttaacacgcacatgtgtacaatcaattgctccaatatagtcct |
502 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||| ||||| | ||||||||| ||||||||||| ||| | |||| |
|
|
| T |
22529863 |
ttttgtgtagggtaatcttttctaccacggtatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcct |
22529962 |
T |
|
| Q |
503 |
gacattcaattaacatattaaaagtgcagaacacaacttat |
543 |
Q |
| |
|
| |||||||||| | |||||||||| | |||| ||||||| |
|
|
| T |
22529963 |
ggcattcaattatcccattaaaagtgtataacataacttat |
22530003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 543
Target Start/End: Original strand, 25992072 - 25992612
Alignment:
| Q |
5 |
agaatcggaaatctctgcttcaacactccaaatgcacattcaatcgacattcgtaatgacgaatgtcgatggttgaataattcacgagggtttcgaggtg |
104 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||| || |||||||||| |||||| || || |||||||||| ||||| |
|
|
| T |
25992072 |
agaattggaaatctcttcttcaacactccaaatgcacattcaatagacattcttaacgatgaatgtcgattgttgaacaactcgcgagggtttcaaggtg |
25992171 |
T |
|
| Q |
105 |
gattcctagaatactcttgtaagtggtacctttctcccctataaggtgtgatgagacatgcctttaaaggaaatccagcatcacccaaataatattttcc |
204 |
Q |
| |
|
|||| |||||||| |||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||| || |||||| | | |||||||||||| |
|
|
| T |
25992172 |
gatttctagaatattcttgtaagtggtaacgttctcccttataaggtgtgatgagacatgcctttaaaggaaaccccgcatcagcaagataatattttcc |
25992271 |
T |
|
| Q |
205 |
tata-aaaataacgagtttattagtttggctaatctagatacttgtacaattatgttgtgnnnnnnnnn-acctcgtggaactttaagaggatatgcacg |
302 |
Q |
| |
|
|||| ||||||| |||| ||||||||||| ||| ||| |||||| || || | |||| |||| | || |||||||||||||| ||| |
|
|
| T |
25992272 |
tatagaaaataatgagtctattagtttggataagctacatacttataaaaagcttttgtattttttcgttaccttgcgggactttaagaggataccgacg |
25992371 |
T |
|
| Q |
303 |
tgtcaacgcactcttaactattctagagtcggatgctgttccttcccatccaaccaagacataagtaaatttcaagtcaaatgtgcattcaaccaagaca |
402 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | | ||| |
|
|
| T |
25992372 |
tgtcaaagcactctttactattcttgagtctgatgctgttccttcccatccaaccaagacatatgtaaatttcaagtcaaatgtgcacgcagcgagtaca |
25992471 |
T |
|
| Q |
403 |
ttttgtgtagggtaatcttttctaccacgatatctaggtgcaagatctgctggtactttaacacgcacatgtgtacaatcaattgctccaatatagtcct |
502 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||| ||||| | ||||||||| ||||||||||| ||| | |||| |
|
|
| T |
25992472 |
ttttgtgtagggtaatcttttctaccacggtatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcct |
25992571 |
T |
|
| Q |
503 |
gacattcaattaacatattaaaagtgcagaacacaacttat |
543 |
Q |
| |
|
| |||||||||| | |||||||||| | |||| ||||||| |
|
|
| T |
25992572 |
ggcattcaattatcccattaaaagtgtataacataacttat |
25992612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 319 - 543
Target Start/End: Original strand, 22532990 - 22533214
Alignment:
| Q |
319 |
actattctagagtcggatgctgttccttcccatccaaccaagacataagtaaatttcaagtcaaatgtgcattcaaccaagacattttgtgtagggtaat |
418 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | || ||||||||||||||||||| |
|
|
| T |
22532990 |
actattcttgagtctgatgctgttccttcccatccaaccaagacatatgtaaatttcaagtcaaatgtgcacgcagcgaatacattttgtgtagggtaat |
22533089 |
T |
|
| Q |
419 |
cttttctaccacgatatctaggtgcaagatctgctggtactttaacacgcacatgtgtacaatcaattgctccaatatagtcctgacattcaattaacat |
518 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| ||| ||||| ||||| | ||||||||| ||||||||||| ||| | ||||| |||||||||| | |
|
|
| T |
22533090 |
cttttctaccacggtatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcctggcattcaattatccc |
22533189 |
T |
|
| Q |
519 |
attaaaagtgcagaacacaacttat |
543 |
Q |
| |
|
|||||||||| | |||| ||||||| |
|
|
| T |
22533190 |
attaaaagtgtataacataacttat |
22533214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 493
Target Start/End: Original strand, 21267383 - 21267423
Alignment:
| Q |
453 |
tggtactttaacacgcacatgtgtacaatcaattgctccaa |
493 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
21267383 |
tggtacttttacacgaacatgtgtacaatcaattgctccaa |
21267423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 543
Target Start/End: Complemental strand, 20985193 - 20984653
Alignment:
| Q |
5 |
agaatcggaaatctctgcttcaacactccaaatgcacattcaatcgacattcgtaatgacgaatgtcgatggttgaataattcacgagggtttcgaggtg |
104 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||| || |||||||||| |||||| || || |||||||||||||||| |
|
|
| T |
20985193 |
agaattggaaatctcttcttcaacactccaaatgcacattcaatagacattcttaacgatgaatgtcgattgttgaacaactcgcgagggtttcgaggtg |
20985094 |
T |
|
| Q |
105 |
gattcctagaatactcttgtaagtggtacctttctcccctataaggtgtgatgagacatgcctttaaaggaaatccagcatcacccaaataatattttcc |
204 |
Q |
| |
|
|||| |||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||| | | |||||||||||| |
|
|
| T |
20985093 |
gatttctagaatattcttgtaagtggtaacgttctcccctataaggtgtgatgagacatgcctttaaaggaaaccccgcatcagcaagataatattttcc |
20984994 |
T |
|
| Q |
205 |
tata-aaaataacgagtttattagtttggctaatctagatacttgtacaattatgttgt-gnnnnnnnnnacctcgtggaactttaagaggatatgcacg |
302 |
Q |
| |
|
|||| ||||||| |||| ||||||||||| ||| ||| |||||| || || | |||| |||| | || |||||||||||||| ||| |
|
|
| T |
20984993 |
tatagaaaataatgagtctattagtttggataagctacatacttataaaaagcttttgtattttttcgttaccttgcgggactttaagaggataccgacg |
20984894 |
T |
|
| Q |
303 |
tgtcaacgcactcttaactattctagagtcggatgctgttccttcccatccaaccaagacataagtaaatttcaagtcaaatgtgcattcaaccaagaca |
402 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | | ||| |
|
|
| T |
20984893 |
tgtcaaagcactctttactattcttgagtctgatgctgttccttcccatccaaccaagacatatgtaaatttcaagtcaaatgtgcacgcagcgagtaca |
20984794 |
T |
|
| Q |
403 |
ttttgtgtagggtaatcttttctaccacgatatctaggtgcaagatctgctggtactttaacacgcacatgtgtacaatcaattgctccaatatagtcct |
502 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||| ||||| | ||||||||| ||||||||||| ||| | |||| |
|
|
| T |
20984793 |
ttttgtgtagggtaatcttttctaccacggtatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcct |
20984694 |
T |
|
| Q |
503 |
gacattcaattaacatattaaaagtgcagaacacaacttat |
543 |
Q |
| |
|
| |||||||||| | |||||||||| | |||| ||||||| |
|
|
| T |
20984693 |
ggcattcaattatcccattaaaagtgtataacataacttat |
20984653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 283 - 543
Target Start/End: Original strand, 49366820 - 49367080
Alignment:
| Q |
283 |
actttaagaggatatgcacgtgtcaacgcactcttaactattctagagtcggatgctgttccttcccatccaaccaagacataagtaaatttcaagtcaa |
382 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49366820 |
actttaagaggataccgacgtgtcaaagcactctttactattcttgagtctgatgctgttccttcccatccaaccaagacatatgtaaatttcaagtcaa |
49366919 |
T |
|
| Q |
383 |
atgtgcattcaaccaagacattttgtgtagggtaatcttttctaccacgatatctaggtgcaagatctgctggtactttaacacgcacatgtgtacaatc |
482 |
Q |
| |
|
||||||| || | | |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||| ||||| | |||||||| || |
|
|
| T |
49366920 |
atgtgcacgcagcgagtacattttgtgtagggtaatcttttctaccacggtatctaggtgcaagttctgttggaactttgacacgtatatgtgtacggtc |
49367019 |
T |
|
| Q |
483 |
aattgctccaatatagtcctgacattcaattaacatattaaaagtgcagaacacaacttat |
543 |
Q |
| |
|
||||||||| ||| | ||||| |||||||||| | |||||||||| | |||| ||||||| |
|
|
| T |
49367020 |
aattgctccgatacaatcctggcattcaattatcccattaaaagtgtataacataacttat |
49367080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 493
Target Start/End: Complemental strand, 8407290 - 8407250
Alignment:
| Q |
453 |
tggtactttaacacgcacatgtgtacaatcaattgctccaa |
493 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
8407290 |
tggtacttttacacgaacatgtgtacaatcaattgctccaa |
8407250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 5 - 543
Target Start/End: Original strand, 20715762 - 20716302
Alignment:
| Q |
5 |
agaatcggaaatctctgcttcaacactccaaatgcacattcaatcgacattcgtaatgacgaatgtcgatggttgaataattcacgagggtttcgaggtg |
104 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||| || |||||||||| |||||| || || ||||||||| |||||| |
|
|
| T |
20715762 |
agaattggaaatctcttcttcaacactccaaatgcacattcaatagacattcttaacgatgaatgtcgattgttgaacaactcgcgagggttttgaggtg |
20715861 |
T |
|
| Q |
105 |
gattcctagaatactcttgtaagtggtacctttctcccctataaggtgtgatgagacatgcctttaaaggaaatccagcatcacccaaataatattttcc |
204 |
Q |
| |
|
|||| |||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||| | | |||||||||||| |
|
|
| T |
20715862 |
gatttctagaatattcttgtaagtggtaacgttctcccctataaggtgtgatgagacatgcctttaaaggaaaccccgcatcagcaagataatattttcc |
20715961 |
T |
|
| Q |
205 |
tata-aaaataacgagtttattagtttggctaatctagatacttgtacaattatgttgt-gnnnnnnnnnacctcgtggaactttaagaggatatgcacg |
302 |
Q |
| |
|
|||| ||||||| |||| ||||||||||| ||| ||| |||||| || || | |||| |||| | || |||||||||||||| ||| |
|
|
| T |
20715962 |
tatagaaaataatgagtctattagtttggataagctacatacttataaaaagcttttgtattttttcgttaccttgcgggactttaagaggataccgacg |
20716061 |
T |
|
| Q |
303 |
tgtcaacgcactcttaactattctagagtcggatgctgttccttcccatccaaccaagacataagtaaatttcaagtcaaatgtgcattcaaccaagaca |
402 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | | ||| |
|
|
| T |
20716062 |
tgtcaaagcactctttactattcttgagtctgatgctgttccttcccatccaaccaagacatatgtaaatttcaagtcaaatgtgcacgcagcgagtaca |
20716161 |
T |
|
| Q |
403 |
ttttgtgtagggtaatcttttctaccacgatatctaggtgcaagatctgctggtactttaacacgcacatgtgtacaatcaattgctccaatatagtcct |
502 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||| ||||| | ||||||||| ||||||||||| ||| | |||| |
|
|
| T |
20716162 |
ttttgtgtagggtaatcttttctaccacggtatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcct |
20716261 |
T |
|
| Q |
503 |
gacattcaattaacatattaaaagtgcagaacacaacttat |
543 |
Q |
| |
|
| |||||||||| | |||||||||| | |||| ||||||| |
|
|
| T |
20716262 |
ggcattcaattatcccattaaaagtgtataacataacttat |
20716302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 22020096 - 22020406
Alignment:
| Q |
12 |
gaaatctctgcttcaacactccaaatgcacattcaatcgacattcgtaatgacgaatgtcgatggttgaataattcacgagggtttcgaggtggattcct |
111 |
Q |
| |
|
|||| |||| |||||||||| ||||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||| | |||||||||| |
|
|
| T |
22020096 |
gaaaactcttcttcaacacttcaaatgcacattcaatcaacattcgtaatgttgaatgtcgatggttaaataattcatgagggtttcaaagtggattcct |
22020195 |
T |
|
| Q |
112 |
agaatactcttgtaagtggtacctttctcccctataaggtgtgatgagacatgcctttaaaggaaatccagcatcacccaaataatattttcctat--aa |
209 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| || |
|
|
| T |
22020196 |
agaatattcttgtaagtggtacctttctcccctataaggtgtgatgagacatgcctttaaaggaaatcctgcaacacctaaataatattttcctataaaa |
22020295 |
T |
|
| Q |
210 |
aaataacgagtttattagtttggctaatctagatacttgtacaattatgttgtgnnnnnnnnnacctcgtggaactttaagaggatatgcacgtgtcaac |
309 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||| | |||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22020296 |
aaataatgagtttattagtttggctaatctagataaatgtacaaatttgttatgtgtttttttaccttgtggaactttaagaggatatgcacgtgtcaac |
22020395 |
T |
|
| Q |
310 |
gcactcttaac |
320 |
Q |
| |
|
||||||||||| |
|
|
| T |
22020396 |
gcactcttaac |
22020406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 493
Target Start/End: Complemental strand, 32038308 - 32038268
Alignment:
| Q |
453 |
tggtactttaacacgcacatgtgtacaatcaattgctccaa |
493 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
32038308 |
tggtacttttacacgaacatgtgtacaatcaattgctccaa |
32038268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 543
Target Start/End: Complemental strand, 33093103 - 33092563
Alignment:
| Q |
5 |
agaatcggaaatctctgcttcaacactccaaatgcacattcaatcgacattcgtaatgacgaatgtcgatggttgaataattcacgagggtttcgaggtg |
104 |
Q |
| |
|
||||| |||||| ||| ||||||||||||||||||||||||||| ||||||| ||| || |||||||||| |||||| || | |||||||||||||||| |
|
|
| T |
33093103 |
agaattggaaatatcttcttcaacactccaaatgcacattcaatagacattcttaacgatgaatgtcgattgttgaacaacttgcgagggtttcgaggtg |
33093004 |
T |
|
| Q |
105 |
gattcctagaatactcttgtaagtggtacctttctcccctataaggtgtgatgagacatgcctttaaaggaaatccagcatcacccaaataatattttcc |
204 |
Q |
| |
|
|||| |||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||| | | |||||||||||| |
|
|
| T |
33093003 |
gatttctagaatattcttgtaagtggtaacgttctcccctataaggtgtgatgagacatgcctttaaaggaaaccccgcatcagcaagataatattttcc |
33092904 |
T |
|
| Q |
205 |
tata-aaaataacgagtttattagtttggctaatctagatacttgtacaattatgttgt-gnnnnnnnnnacctcgtggaactttaagaggatatgcacg |
302 |
Q |
| |
|
|||| ||||||| |||| ||||||||||| ||| ||| |||||| || || | |||| |||| | || |||||||||||||| ||| |
|
|
| T |
33092903 |
tatagaaaataatgagtctattagtttggataagctacatacttataaaaagcttttgtattttttcgttaccttgcgggactttaagaggataccgacg |
33092804 |
T |
|
| Q |
303 |
tgtcaacgcactcttaactattctagagtcggatgctgttccttcccatccaaccaagacataagtaaatttcaagtcaaatgtgcattcaaccaagaca |
402 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| || | | ||| |
|
|
| T |
33092803 |
tgtcaaagcactctttactattcttgagtctgatgctgttccttcccatccaaccaagacatatgtaaatttcaagccaaatgtgcacgcagcgagtaca |
33092704 |
T |
|
| Q |
403 |
ttttgtgtagggtaatcttttctaccacgatatctaggtgcaagatctgctggtactttaacacgcacatgtgtacaatcaattgctccaatatagtcct |
502 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||| ||||| | ||||||||| ||||||||||| ||| | |||| |
|
|
| T |
33092703 |
ttttgtgtagggtaatcttttctaccacggtatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccgatacaatcct |
33092604 |
T |
|
| Q |
503 |
gacattcaattaacatattaaaagtgcagaacacaacttat |
543 |
Q |
| |
|
| |||||||||| | |||||||||| | |||| ||||||| |
|
|
| T |
33092603 |
ggcattcaattatcccattaaaagtgtataacataacttat |
33092563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 4e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 96 - 528
Target Start/End: Original strand, 13189983 - 13190417
Alignment:
| Q |
96 |
ttcgaggtggattcctagaatactcttgtaagtggtacctttctcccctataaggtgtgatgagacatgcctttaaaggaaatccagcatcacccaaata |
195 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||| | | ||| |
|
|
| T |
13189983 |
ttcgaggtggatttctagaatattcttgtaagtggtaacgttctcccctataaggtgtgatgagacatgcctttaaaggaaaccccgcatcagcaagata |
13190082 |
T |
|
| Q |
196 |
atattttcctata-aaaataacgagtttattagtttggctaatctagatacttgtacaattatgttgtgnnnnnnnnn-acctcgtggaactttaagagg |
293 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||||| ||| ||| |||||| || || | |||| |||| | || ||||||||||| |
|
|
| T |
13190083 |
atattttcctatagaaaataatgagtctattagtttggataagctacatacttataaaaagcttttgtattttttcgttaccttgcgggactttaagagg |
13190182 |
T |
|
| Q |
294 |
atatgcacgtgtcaacgcactcttaactattctagagtcggatgctgttccttcccatccaaccaagacataagtaaatttcaagtcaaatgtgcattca |
393 |
Q |
| |
|
||| | ||||||| |||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
13190183 |
ataccgatgtgtcaaagcactctttactattcttgagtctgatgttgttccttcccatccaaccaagacatatgtaaatttcaagtcaaatgtgcacgca |
13190282 |
T |
|
| Q |
394 |
accaagacattttgtgtagggtaatcttttctaccacgatatctaggtgcaagatctgctggtactttaacacgcacatgtgtacaatcaattgctccaa |
493 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||| ||||| | ||||||||| ||||||||||| | |
|
|
| T |
13190283 |
gcgagtacattttgtgtagggtaatcttttctaccacggtatctaggtgcaagttctgttggaactttgacacgtatatgtgtacagtcaattgctccga |
13190382 |
T |
|
| Q |
494 |
tatagtcctgacattcaattaacatattaaaagtg |
528 |
Q |
| |
|
|| | ||||| |||||||||| | |||||||||| |
|
|
| T |
13190383 |
tacaatcctggcattcaattatcccattaaaagtg |
13190417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 493
Target Start/End: Original strand, 37504046 - 37504086
Alignment:
| Q |
453 |
tggtactttaacacgcacatgtgtacaatcaattgctccaa |
493 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
37504046 |
tggtacttttacacgaacatgtgtacaatcaattgctccaa |
37504086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 494
Target Start/End: Complemental strand, 26248134 - 26248093
Alignment:
| Q |
453 |
tggtactttaacacgcacatgtgtacaatcaattgctccaat |
494 |
Q |
| |
|
||||||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
26248134 |
tggtacttttatacgaacatgtgtacaatcaattgctccaat |
26248093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 493
Target Start/End: Complemental strand, 37569067 - 37569027
Alignment:
| Q |
453 |
tggtactttaacacgcacatgtgtacaatcaattgctccaa |
493 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
37569067 |
tggtacttttacacgaacatgtgtacaatcaattgctccaa |
37569027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University