View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_high_26 (Length: 256)
Name: NF1580_high_26
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_high_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 35913805 - 35913568
Alignment:
| Q |
17 |
agattcattttcgagatgcatgttgtttaattttctaccaatatgctgaatatattttctaacttcgttttgtttattttaacagggacatgnnnnnnnn |
116 |
Q |
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| T |
35913805 |
agattcattttcgagatgcatgttgtttaattttctaccaatatgctgaatatattttctaacttcgttttgtttattttaacagggacatgtttttttt |
35913706 |
T |
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| Q |
117 |
aaggtacgaataggcaaatgctagtaagttatggttacattaaagtttagggttttaactttagacaatctgatnnnnnnnncttttttgcagtcactta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
35913705 |
aaggtacgaataggcaaatgctagtaagttatggttacattaaagtttagggttttaactttagacaatctggt--aaaaaacttttttgcagtcactta |
35913608 |
T |
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| Q |
217 |
agtttcaccaaccgagcaaacagtcgactttggacatacc |
256 |
Q |
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| T |
35913607 |
agtttcaccaaccgagcaaacagtcgactttggacatacc |
35913568 |
T |
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