View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_high_28 (Length: 254)
Name: NF1580_high_28
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 47805555 - 47805331
Alignment:
| Q |
14 |
atgaagaaagaagatgatgatgatgataaagaccccagacttgccggagctattctcttcggtctaattgccgccacaaccactactctcctcgtacgta |
113 |
Q |
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| T |
47805555 |
atgaagaaagcagatgatgatgatgataaagaccccagacttgccggagctattctcttcggtctaattgccgccacaaccactactctcctcgtacgta |
47805456 |
T |
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| Q |
114 |
agcttatagattcatttcnnnnnnnnaggtttcgctaataattcattatcctaatctcaattttctttcagttcggtcaggttcgcaaaactcttgaatg |
213 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47805455 |
agcttatagattcatttc--ttttttaggtttcgctaataattcattatcctaatctcaattttctttcagttcggtcaggttcgcaaaactcttgaatg |
47805358 |
T |
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| Q |
214 |
gttctctattcaggtatttttcctttt |
240 |
Q |
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||||||||||||||||||||||||||| |
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| T |
47805357 |
gttctctattcaggtatttttcctttt |
47805331 |
T |
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