View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_high_3 (Length: 589)
Name: NF1580_high_3
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 262 - 574
Target Start/End: Original strand, 34893286 - 34893598
Alignment:
| Q |
262 |
gtgattggtttgacacacttcatagttaaccaaaaatcactgtaaacacttataaaattcgacaaaatatagaatgaaaatcttaataattcaaacctta |
361 |
Q |
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| T |
34893286 |
gtgataggtttgacacactttatagttaaccaaaaatcactgtaaacactaataaaattcgataaaatatagaatgaaaatcttaatcattcaaacctta |
34893385 |
T |
|
| Q |
362 |
ttaacaatctagatcattaagacatagtaacaacagtagaatgaaatctagttggaaaccaagaatggatccattctgttccttgtcagcacaatcatgt |
461 |
Q |
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| T |
34893386 |
ttaacaatctagatcattaagacatagtaacaacagtagaatgaaatctagttggaaaccaagaatggatccattctgttccttgtcagcacaatcatgt |
34893485 |
T |
|
| Q |
462 |
atggtgcaaaacatgtttgtccaacgtaaaagaagcatggagtgcctttctttaaatgcctttttatgttacttttgggaaatagttgatatcaatgtca |
561 |
Q |
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| T |
34893486 |
atggtgcaaaacatgtttgtccaacgtaaaagaagcatggagtgcctttctttaaatgcctttttatgttacttttgggaaatagttgatatcaatgtca |
34893585 |
T |
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| Q |
562 |
tcatgtttaaagt |
574 |
Q |
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| T |
34893586 |
tcatgtttaaagt |
34893598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 31763642 - 31763600
Alignment:
| Q |
267 |
tggtttgacacacttcatagttaaccaaaaatcactgtaaaca |
309 |
Q |
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| T |
31763642 |
tggtttggcacacttcataattaaccaaaaatcactgcaaaca |
31763600 |
T |
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