View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_high_33 (Length: 245)
Name: NF1580_high_33
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 4132910 - 4133152
Alignment:
| Q |
1 |
ccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcacttccaatttcttgtatatcccttgttgctaattccacaaatct |
100 |
Q |
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| T |
4132910 |
ccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcatttccaatttcttgtatatcccttgttgctaattccacaaatct |
4133009 |
T |
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| Q |
101 |
ggaagcaacatatgttgcaacggtttagatagccacaccatcagacccctccgattcaaattttactgctactaaccaattagttcctcacatcagtcca |
200 |
Q |
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| T |
4133010 |
ggaagcaacatatgttgcaatggtttagatagccacaccatcagacccttccgattcaaattttactgctactaaccaattagttcctcacatcagtcca |
4133109 |
T |
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| Q |
201 |
cttccacaacaccttctagctaataacaacttgacactttgat |
243 |
Q |
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| T |
4133110 |
cttccacaacaccttctagctaataacaacttgacactttgat |
4133152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43142220 - 43142144
Alignment:
| Q |
1 |
ccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcacttccaatttcttgtatatcc |
77 |
Q |
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||||||||||| | ||| |||| | | |||| |||||||||| ||||||||| | |||||||||||||||||||| |
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| T |
43142220 |
ccaaaactttacaccgagctttctaattcactacacacagatagtaccaagatgtaattccaatttcttgtatatcc |
43142144 |
T |
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