View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_high_34 (Length: 243)
Name: NF1580_high_34
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_high_34 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 54863076 - 54863309
Alignment:
| Q |
10 |
gacatcatcctagatgcccccaagactcttatcttcaaccttagctacaatcgttgtaatgataaatgatttgatcgaatgtttggaatgattgatgaac |
109 |
Q |
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| T |
54863076 |
gacatcatcctagatgcccccaagactcttatcttcaaccttagctacaatcgttgtaatgataaatgatttgatcgaatgtttggaatgattgatgaac |
54863175 |
T |
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| Q |
110 |
caaattggttattgatacatttaataatgatagttatttgaactcttaagaataattcttacaatgcataattataaggttgcacaaataatccaagtga |
209 |
Q |
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| T |
54863176 |
caaattggttattgatacatttaataatgatagttatttgaactcttaagaataattcttacaatgcataattataaggttgcacaaataatccaagtaa |
54863275 |
T |
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| Q |
210 |
aagattgttagatctttaatccaacattgacttc |
243 |
Q |
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| T |
54863276 |
aagattgttagatctttaatccaacattgacttc |
54863309 |
T |
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