View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_high_37 (Length: 240)
Name: NF1580_high_37
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 54863303 - 54863525
Alignment:
| Q |
1 |
tgacttcacgtgtgaacaattatgtatcctagattgtcacttacgtcaattttaattaaaagtgctttattaacgtcgactaatacggacttatgaatat |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| || ||||||| ||||||||||||| | |
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| T |
54863303 |
tgacttcacgtgtgaacaattatgtatcgtagattgtcacttacatcaattttaattaaaagtgctttaataatgttgactaatgcggacttatgaatgt |
54863402 |
T |
|
| Q |
101 |
ctatcaggtgtagagataaaagagtgattctgttaaaaaggtaaaatcgaaatgatagtagataataagtgtttgagtggatcttagatattttattgaa |
200 |
Q |
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|||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| | | ||||||||||||||| |
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| T |
54863403 |
ctatcaggtgtagagacaaaagagtgattatgttaaaagggtaaaatcgaaatgatagtagataataagtgcttgagtgggtgtcagatattttattgaa |
54863502 |
T |
|
| Q |
201 |
ccttttgttataatagggctaag |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
54863503 |
ccttttgttataatagggctaag |
54863525 |
T |
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