View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_high_40 (Length: 235)
Name: NF1580_high_40
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34860575 - 34860356
Alignment:
| Q |
1 |
ccctacttaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactctgtgagttag |
100 |
Q |
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| T |
34860575 |
ccctactcaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactctgtgagttag |
34860476 |
T |
|
| Q |
101 |
ttctgttgttaatttgaatattgtggcatgtaagagtcgcctattctaaagatattagctggcttgccttgacatgatggataatttctctattttaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860475 |
ttctgttgttaatttgaatattgtggcatgtaagagtcacctattctaaagatattagctggcttgccttgacatgatggataatttctctattttaaca |
34860376 |
T |
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| Q |
201 |
gtcttccctacataaatact |
220 |
Q |
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|||||||||||||||||||| |
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| T |
34860375 |
gtcttccctacataaatact |
34860356 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 2242518 - 2242594
Alignment:
| Q |
4 |
tacttaaatacaacaaatctttttaccacttctctgaaaaagcag--acttcaaagagtggtatttggaatttttct |
78 |
Q |
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|||| ||||||||| |||||||| ||||||||||| | ||||||| | ||||||||||||||| || || |||||| |
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| T |
2242518 |
tactcaaatacaactaatcttttgaccacttctctaacaaagcagataattcaaagagtggtatgtgcaagttttct |
2242594 |
T |
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