View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_high_42 (Length: 233)
Name: NF1580_high_42
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 52082928 - 52082726
Alignment:
| Q |
8 |
gtgagaagaactctaattctttgctggactttgttgtataccctcaagtgaagtctctccatttggcccgcaatccattgttgaagaatgaaagcgtcaa |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
52082928 |
gtgataagaactctaattctttgctggactttgttgtataccctcaagtgaagtctctccatttggctcgcaatccattgttgaagaatgaaagcatcaa |
52082829 |
T |
|
| Q |
108 |
aatgttggcttctctttttccaaacttgcaagtgcttgacctgagatattgccattgctattgcatatctgacggtatcgttgaagttttaagatattgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52082828 |
aatgttggcttctctttttccaaacttgcaagtgcttgacctgagatattgccattgctattgcatatctgacggtatcgttgaagttttaagatattgt |
52082729 |
T |
|
| Q |
208 |
aaa |
210 |
Q |
| |
|
||| |
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|
| T |
52082728 |
aaa |
52082726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 52093130 - 52092922
Alignment:
| Q |
8 |
gtgagaagaactctaattctttgctggactttgttgtataccctcaagtgaagtctctccatttggcccgcaatccattgttgaagaatgaaagcgtcaa |
107 |
Q |
| |
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|||| ||||| | ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||| |
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| T |
52093130 |
gtgataagaattgtaattgtttgatggactttgttgtataccctcaagtgaagtctctccatttggcaggcaatccacggttgaaaaatgaaagcatcaa |
52093031 |
T |
|
| Q |
108 |
aatgttggcttctctttttccaaacttgcaagtgcttgacct------gagatattgccattgctattgcatatctgacggtatcgttgaagttttaaga |
201 |
Q |
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||||||| |||||||||| |||||| |||| | ||||||||| ||||||||||||||||||||||||||| || ||||| ||||||||||||||| |
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| T |
52093030 |
aatgttgccttctcttttcccaaacctgcaggggcttgacctgagaatgagatattgccattgctattgcatatccgaaggtattgttgaagttttaaga |
52092931 |
T |
|
| Q |
202 |
tattgtaaa |
210 |
Q |
| |
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| ||||||| |
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| T |
52092930 |
tgttgtaaa |
52092922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 10167444 - 10167495
Alignment:
| Q |
23 |
attctttgctggactttgttgtataccctcaagtgaagtctctccatttggc |
74 |
Q |
| |
|
||||||||| ||| |||| ||||||||||||| ||||||||||| ||||||| |
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| T |
10167444 |
attctttgccggattttggtgtataccctcaattgaagtctctctatttggc |
10167495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 10169900 - 10169951
Alignment:
| Q |
23 |
attctttgctggactttgttgtataccctcaagtgaagtctctccatttggc |
74 |
Q |
| |
|
||||||||| ||| |||| ||||||||||||| ||||||||||| ||||||| |
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|
| T |
10169900 |
attctttgccggattttggtgtataccctcaattgaagtctctctatttggc |
10169951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 10177425 - 10177476
Alignment:
| Q |
23 |
attctttgctggactttgttgtataccctcaagtgaagtctctccatttggc |
74 |
Q |
| |
|
||||||||| ||| |||| ||||||||||||| ||||||||||| ||||||| |
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|
| T |
10177425 |
attctttgccggattttggtgtataccctcaattgaagtctctctatttggc |
10177476 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 33396820 - 33396786
Alignment:
| Q |
40 |
gttgtataccctcaagtgaagtctctccatttggc |
74 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
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|
| T |
33396820 |
gttgtataccatcaagtgaagtctctccatttggc |
33396786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 33708804 - 33708838
Alignment:
| Q |
40 |
gttgtataccctcaagtgaagtctctccatttggc |
74 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
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|
| T |
33708804 |
gttgtataccatcaagtgaagtctctccatttggc |
33708838 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 37580607 - 37580641
Alignment:
| Q |
40 |
gttgtataccctcaagtgaagtctctccatttggc |
74 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
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|
| T |
37580607 |
gttgtataccatcaagtgaagtctctccatttggc |
37580641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 33093715 - 33093748
Alignment:
| Q |
41 |
ttgtataccctcaagtgaagtctctccatttggc |
74 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
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|
| T |
33093715 |
ttgtataccgtcaagtgaagtctctccatttggc |
33093748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 514486 - 514546
Alignment:
| Q |
14 |
agaactctaattctttgctggactttgttgtataccctcaagtgaagtctctccatttggc |
74 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| |||||||| | || |||||| ||||||| |
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|
| T |
514486 |
agaactccaattctttgttggactttgttgtgaaccctcaattaaaatctctctatttggc |
514546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 51764201 - 51764253
Alignment:
| Q |
14 |
agaactctaattctttgctggactttgttgtataccctcaagtgaagtctctc |
66 |
Q |
| |
|
|||| ||| |||||||| ||||||||| ||||||||||||| | ||||||||| |
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|
| T |
51764201 |
agaattctgattctttggtggactttggtgtataccctcaattaaagtctctc |
51764253 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 32785538 - 32785600
Alignment:
| Q |
19 |
tctaattctttgctggactttgttgtataccctcaagtgaagtctctccatttggcccgcaat |
81 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||| | |||| |||||||||||| |||||| |
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|
| T |
32785538 |
tctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctcgcaat |
32785600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 547254 - 547194
Alignment:
| Q |
14 |
agaactctaattctttgctggactttgttgtataccctcaagtgaagtctctccatttggc |
74 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
547254 |
agaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccatttggc |
547194 |
T |
|
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