View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_high_50 (Length: 223)
Name: NF1580_high_50
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_high_50 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47805016 - 47805239
Alignment:
| Q |
1 |
acacaacaaagcaaatcttgcatttaaaattcggagttggacaatagtgcaatataaagttgataagagcagaagattaaaa-aactcacgactctctcc |
99 |
Q |
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| T |
47805016 |
acacaacaaagcaaatctagcatttaaaattcggagttggacaatagtgcaatataaagttgttaagagcagaagattaaaaaaactcacgactctctcc |
47805115 |
T |
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| Q |
100 |
atctcttcctcatactcctcttgcattcgcttattgtgttttctccaggcctcttcctgataagctgttctataagaactaccactctttcctttccatg |
199 |
Q |
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| T |
47805116 |
atctcttcctcatactcctcttgcattcgcttattgtgttttctccaggcctcttcctgataagctgttctataagagctaccactctttcctttccatg |
47805215 |
T |
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| Q |
200 |
cccgagtcctcattgcctagaatt |
223 |
Q |
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| T |
47805216 |
cccgagtcctcgttacctagaatt |
47805239 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 4757740 - 4757684
Alignment:
| Q |
80 |
aaaaactcacgactctctccatctcttcctcatactcctcttgcattcgcttattgt |
136 |
Q |
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|||||||||| |||||||| ||||||||| || |||||||||| ||||||||||| |
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| T |
4757740 |
aaaaactcaccactctctcagcctcttcctcgtattcctcttgcaatcgcttattgt |
4757684 |
T |
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