View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_high_53 (Length: 220)
Name: NF1580_high_53
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 6566998 - 6566807
Alignment:
| Q |
11 |
agcagagatgaattgagaaggagcaacgatagtttttgtgctcagaataatttgttcttnnnnnnnnnnnnnnnngttgagaacattaaagtgattattg |
110 |
Q |
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| T |
6566998 |
agcaaagatgaattgagaaggagcaacgatagtttttgtgctcagaataatttgttcttaaaaacaaaaacaaaagttgagaacattaaagtgattattg |
6566899 |
T |
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| Q |
111 |
taccttctgcatcagtgctacaaccatttcaggactctctggtatgccatgctctaaatatgcctacaatataaccaaataattgtagtcac |
202 |
Q |
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| T |
6566898 |
taccttctgcatcagtgctacaaccatttcgggactctctggtatgccatgctctaaatatgcctacaatataaccaaataattgtagtcac |
6566807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 34259162 - 34259230
Alignment:
| Q |
111 |
taccttctgcatcagtgctacaaccatttcaggactctctggtatgccatgctctaaatatgcctacaa |
179 |
Q |
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| T |
34259162 |
taccttttgcattagggctacaaccatttccggactttcaggtatgccatgttctaagtatgcctacaa |
34259230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 46639748 - 46639794
Alignment:
| Q |
112 |
accttctgcatcagtgctacaaccatttcaggactctctggtatgcc |
158 |
Q |
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||||||||||||| ||| ||||||||||||||||| ||||||||||| |
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| T |
46639748 |
accttctgcatcaatgcaacaaccatttcaggactttctggtatgcc |
46639794 |
T |
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