View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1580_high_7 (Length: 498)

Name: NF1580_high_7
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1580_high_7
NF1580_high_7
[»] chr5 (9 HSPs)
chr5 (1-485)||(40181207-40181692)
chr5 (213-492)||(38605684-38605960)
chr5 (342-430)||(40180547-40180635)
chr5 (285-421)||(41885856-41885992)
chr5 (362-495)||(38604987-38605120)
chr5 (443-498)||(41885995-41886050)
chr5 (17-78)||(40180938-40180999)
chr5 (36-105)||(38606068-38606137)
chr5 (48-105)||(41885617-41885674)
[»] chr1 (1 HSPs)
chr1 (17-496)||(46358821-46359295)
[»] chr8 (10 HSPs)
chr8 (11-197)||(44459244-44459430)
chr8 (11-197)||(44466777-44466963)
chr8 (310-496)||(44459540-44459723)
chr8 (218-496)||(44460150-44460425)
chr8 (310-496)||(44467073-44467256)
chr8 (218-496)||(44467683-44467958)
chr8 (362-496)||(34502251-34502382)
chr8 (36-105)||(34502619-34502688)
chr8 (36-118)||(44459962-44460044)
chr8 (36-118)||(44467495-44467577)
[»] chr6 (1 HSPs)
chr6 (353-496)||(410919-411063)


Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 40181692 - 40181207
Alignment:
Q  1 caatctagttcaacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaat 100  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40181692 caatctagttcaacatcatcaacaacactttctaatcagtgttattgaaacctcttgtcaaactaaattagctgaaaccctagaagttccacctcagaat 40181593  T
Q  101 cttatatacttcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttcact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40181592 cttatatacttcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactactgttcact 40181493  T
Q  201 atgattttaatgttaaactaaggaagaaatacatatt-ttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaagga 299  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||    
T  40181492 atgatttcaatgttaaactaaggaagaaatacatatttttttctgtgggacatgcttaagtatattggccgctatgaaactgactttcttaatgcaagga 40181393  T
Q  300 ttctaaataaactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaa 399  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181392 ttctcaataaactcatagaatccttctcagttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaa 40181293  T
Q  400 tcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatct 485  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||    
T  40181292 tcaagatacatattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaagcagagtctatct 40181207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 213 - 492
Target Start/End: Complemental strand, 38605960 - 38605684
Alignment:
Q  213 ttaaactaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaact 312  Q
    ||||||||||||||||  ||||| |||||||||||||  |||||||||| |||||||  ||| |||| | | |||||||| ||   ||||| ||| | ||    
T  38605960 ttaaactaaggaagaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaaccggccttcttaacccacccattctcaatcacct 38605861  T
Q  313 catagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttat 412  Q
    |||| ||| ||||||  |||| || |   |||| ||| | |||||||| ||||||||||  ||||| || ||||||||||||||||||||||| || |||    
T  38605860 catacaattcttctcaattataggtcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatat 38605761  T
Q  413 tactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctgttaaaa 492  Q
    |||| |||||| |||||||||||   || ||||| ||||||||||||||| ||||||||| |  ||||||||||| ||||    
T  38605760 tactttacacttcaagctctttt---gaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaa 38605684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 430
Target Start/End: Complemental strand, 40180635 - 40180547
Alignment:
Q  342 aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagct 430  Q
    |||| ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||  || |||||||||||||    
T  40180635 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 40180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 285 - 421
Target Start/End: Original strand, 41885856 - 41885992
Alignment:
Q  285 ttcttaacgcaaggattctaaataaactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatt 384  Q
    ||||||||||  |||||||||||||||| ||||||| ||||||  |||||||||   |||| || || ||||  |||||||||||||| ||||| |  ||    
T  41885856 ttcttaacgctcggattctaaataaactaatagaattcttctcaattatggggcgagaagggaaagctgcacacgatgtttttcataaatttgaggcttt 41885955  T
Q  385 tcaatgtgtgccaaatcaagatacttattactataca 421  Q
    |||||||| ||||||||||||||| ||||||| ||||    
T  41885956 tcaatgtgagccaaatcaagatacatattactttaca 41885992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 362 - 495
Target Start/End: Complemental strand, 38605120 - 38604987
Alignment:
Q  362 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 461  Q
    ||||||||||| ||||| || ||||| |||||||| ||||||||| | |||  || ||||||| |||||||||| | ||  ||||| || ||||||||||    
T  38605120 gtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgata 38605021  T
Q  462 tgatccaccaaacagcttctatctgttaaaagat 495  Q
    || |||| ||| | |||||||||||| |||||||    
T  38605020 tgctccagcaagccgcttctatctgtcaaaagat 38604987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 443 - 498
Target Start/End: Original strand, 41885995 - 41886050
Alignment:
Q  443 acaaggtgtagtgctgatatgatccaccaaacagcttctatctgttaaaagatgat 498  Q
    |||||| |||||| |||||||||||||||||| |||||||||||||||||||||||    
T  41885995 acaaggagtagtgatgatatgatccaccaaactgcttctatctgttaaaagatgat 41886050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 40180999 - 40180938
Alignment:
Q  17 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaac 78  Q
    ||||||||| | ||| || ||||||||||| |||||||||||||||||||||| | ||||||    
T  40180999 catcaacaacattttttactcaaagttattaaaacctcttgtcaaactaaatttgttgaaac 40180938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 38606137 - 38606068
Alignment:
Q  36 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 105  Q
    ||||||||||| |||||||||||||||| ||||||| | |||||| ||| ||  ||||||| || |||||    
T  38606137 tcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttat 38606068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 41885617 - 41885674
Alignment:
Q  48 aaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 105  Q
    ||||||||||||||| |||||||| | |||||| ||| ||||||||||| ||| ||||    
T  41885617 aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataattttat 41885674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 17 - 496
Target Start/End: Original strand, 46358821 - 46359295
Alignment:
Q  17 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataa 116  Q
    ||||||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||| ||||    
T  46358821 catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa 46358920  T
Q  117 agatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttcactatgattttaatgttaa 216  Q
    || || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  |  |||| |  | |||| |  |  ||||  |||| || |    
T  46358921 agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcagaaatatg--ccgctggttccactgatgataatattca 46359018  T
Q  217 actaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcata 316  Q
     |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||    
T  46359019 tctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactccta 46359118  T
Q  317 gaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattact 416  Q
     | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  |     
T  46359119 cactcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcc 46359218  T
Q  417 atacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctgttaaaagatg 496  Q
    |||| ||||||||| ||||   || ||||| |||||   ||||||||||||||||| | |||||||| ||| ||||||||    
T  46359219 atacgctgcaagctttttt---gaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatg 46359295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 44459244 - 44459430
Alignment:
Q  11 caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatact 110  Q
    |||||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||    
T  44459244 caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaact 44459343  T
Q  111 tcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttc 197  Q
    | |||||| || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  ||||||| || || ||||||    
T  44459344 ttataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc 44459430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 44466777 - 44466963
Alignment:
Q  11 caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatact 110  Q
    |||||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||    
T  44466777 caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaact 44466876  T
Q  111 tcataaagatgctttggaaggataataaggatctcatcgatacccatgttttggaatatcttgttgaatcaataagcactgctgttc 197  Q
    | |||||| || |||||||| |||| ||||| ||||||  ||||| |||| ||||||  ||||||  ||||||| || || ||||||    
T  44466877 ttataaagttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctctactgttc 44466963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 310 - 496
Target Start/End: Original strand, 44459540 - 44459723
Alignment:
Q  310 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 409  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44459540 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44459639  T
Q  410 tattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctgttaaaagatg 496  Q
    ||||||| ||| ||||||||||||||   || ||| |  |||||| || |||||||||| ||| |||||||||||||| | ||||||    
T  44459640 tattactttactctgcaagctctttt---gaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagatg 44459723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 218 - 496
Target Start/End: Original strand, 44460150 - 44460425
Alignment:
Q  218 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatag 317  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||     
T  44460150 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac 44460249  T
Q  318 aatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattacta 417  Q
    | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |    
T  44460250 actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca 44460349  T
Q  418 tacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctgttaaaagatg 496  Q
    ||| ||||||||| ||||||    ||||| |||||   ||||||||||||||||| | |||||||| ||| ||||||||    
T  44460350 tacgctgcaagcttttttgac---cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatg 44460425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 310 - 496
Target Start/End: Original strand, 44467073 - 44467256
Alignment:
Q  310 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 409  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44467073 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44467172  T
Q  410 tattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctgttaaaagatg 496  Q
    ||||||| ||| ||||||||||||||   || ||| |  |||||| || |||||||||| ||| |||||||||||||| | ||||||    
T  44467173 tattactttactctgcaagctctttt---gaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagatg 44467256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 218 - 496
Target Start/End: Original strand, 44467683 - 44467958
Alignment:
Q  218 ctaaggaagaaatacatattttttctgtgggacatgcttaagaaaattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatag 317  Q
    |||||||||||  |||||||||||||||||||  |||||||| | ||||||| |||| | |||||| |||||| | | |||||||| ||| ||||| ||     
T  44467683 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac 44467782  T
Q  318 aatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattacta 417  Q
    | |||||     | |||  |   ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |    
T  44467783 actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca 44467882  T
Q  418 tacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctgttaaaagatg 496  Q
    ||| ||||||||| ||||||    ||||| |||||   ||||||||||||||||| | |||||||| ||| ||||||||    
T  44467883 tacgctgcaagcttttttgac---cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatg 44467958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 362 - 496
Target Start/End: Complemental strand, 34502382 - 34502251
Alignment:
Q  362 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 461  Q
    ||||||||||| ||||| | ||||||||||||||| |||| |||||| ||   || ||||||| ||||||||||||    |||||| ||||   ||||||    
T  34502382 gtttttcataaatttgaggcatttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctcttttgat---cacaagatgtatcactgata 34502286  T
Q  462 tgatccaccaaacagcttctatctgttaaaagatg 496  Q
    ||| ||||||| | |||||||||||| ||||||||    
T  34502285 tgacccaccaagccgcttctatctgtcaaaagatg 34502251  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 34502688 - 34502619
Alignment:
Q  36 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 105  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||| ||| ||| | ||||| ||||||||    
T  34502688 tcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttat 34502619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 44459962 - 44460044
Alignment:
Q  36 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 118  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44459962 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44460044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 44467495 - 44467577
Alignment:
Q  36 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 118  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44467495 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44467577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 353 - 496
Target Start/End: Original strand, 410919 - 411063
Alignment:
Q  353 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgta 452  Q
    |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||   || |||| || |||||||||| || |  ||||| || |    
T  410919 gcacttgaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatacatacatctttacattggaagctctttttagaacaacaagttgca 411018  T
Q  453 gtgc-tgatatgatccaccaaacagcttctatctgttaaaagatg 496  Q
    || | | ||||| |||| ||| | |||||||||||| ||||||||    
T  411019 gtactttatatgctccagcaagcggcttctatctgtcaaaagatg 411063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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