View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_high_9 (Length: 454)
Name: NF1580_high_9
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_high_9 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 313
Target Start/End: Original strand, 11350798 - 11351098
Alignment:
| Q |
13 |
aatatgctggttacattacagttgatgaagtgcagaaaagagctttgttttactactttgttgaagcagaagttgaaccagcttccaagccagtagtgct |
112 |
Q |
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| T |
11350798 |
aatatgctggttacattacagttgatgaagtgcagaaaagagctttgttttactactttgttgaagcagaagttgaaccagcttccaagccagtagtgct |
11350897 |
T |
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| Q |
113 |
ttggttaaatggaggtatgtagctatgaagcatcctcgcagatacagacaacgaatatgacactgatacatagacacaataaagagttttagaaaattaa |
212 |
Q |
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| T |
11350898 |
ttggttaaatggaggtatgtagctatgaagcatcctcgcagatacagacaccgaatatgacactgatacatagacacaataaagagttttagaaaattaa |
11350997 |
T |
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| Q |
213 |
agtgattgagtataaccattaactacatgtgtcggtgtcatgattgaatccgacatgtatcagacaccaaatacacttttaatctatatatatgtgctac |
312 |
Q |
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| T |
11350998 |
agtgattgagtataaccattaactacatgtgtcggtgtcatgattgaatccgacatgtatcagacaccaaatacacttttaatctatatatatgtgctac |
11351097 |
T |
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| Q |
313 |
a |
313 |
Q |
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| T |
11351098 |
a |
11351098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 370 - 454
Target Start/End: Original strand, 11351156 - 11351240
Alignment:
| Q |
370 |
agcgagcgatgggttttatggactttgttttttcagtggttgttttgcaactgggttttaatttaggcggtgatgttggtgttgg |
454 |
Q |
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| T |
11351156 |
agcgagcgatgggttttatggactttgttttttcagtggttgttttgcaactgggttttaatttaggcggtgatgttggtgttgg |
11351240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 370 - 454
Target Start/End: Complemental strand, 42638397 - 42638312
Alignment:
| Q |
370 |
agcgagcgatgggt-tttatggactttgttttttcagtggttgttttgcaactgggttttaatttaggcggtgatgttggtgttgg |
454 |
Q |
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| T |
42638397 |
agcgagcgattggtgtttatggactttgttttttcagtggttgttttgcaactgggttttaatttacgcggtgacgttgatgttgg |
42638312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 454
Target Start/End: Original strand, 20720072 - 20720141
Alignment:
| Q |
384 |
tttatggactttgttttttcagtggttgttttgcaactgggttttaatttaggcggtgatgttggtgttgg |
454 |
Q |
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| T |
20720072 |
tttatggacttttgtttttcagtagtcgctt-gcaacggagttttgatttaggcggtgatgttggtgttgg |
20720141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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