View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_11 (Length: 443)
Name: NF1580_low_11
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 161 - 425
Target Start/End: Complemental strand, 7563312 - 7563048
Alignment:
| Q |
161 |
ttgggtgtgtattataaattcaatggtaaaagtttgacttgtaatctcaaggggcatagttcaattctcccaagggaggttgtgaaatggcagtgccact |
260 |
Q |
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| T |
7563312 |
ttgggtgtgtattataagttcaatggtaaaagtttgacttgtaatctcaaggggcgtagttcaattctcccaagggaggttgtgaaatggcagtgccact |
7563213 |
T |
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| Q |
261 |
tcaattaataataaatatatacatgacacctatatataaagaaaaattacgaaggttgtgattttggcaccttttccaggaggtgggcgttctccataat |
360 |
Q |
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| T |
7563212 |
tcaattaataataaatatatacatgacacctatatataaagaaaaattacgaaaattatgattttggcaccttttccaggaggtgggcgttctccataat |
7563113 |
T |
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| Q |
361 |
agtactttcttttcttcttcctgcagcagacaaagcaagcgatgaccaaaatgataagagcaact |
425 |
Q |
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| T |
7563112 |
agtactttcttttcttcttcctgcagcagacaaagcaagcgatgaccaaaatgataagagcaact |
7563048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 7563490 - 7563366
Alignment:
| Q |
23 |
tttggaaccattccattttgaaccctaacaacatgttcccgatctccatagtaatttgagtgatgcccactagtgtaatagttgctattccctgcattat |
122 |
Q |
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| T |
7563490 |
tttggacccattccattttgaaccctaacaacatgttcccgatctccatagtaatttgagtgatgcccactagtgtaatagttactattccctgcattat |
7563391 |
T |
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| Q |
123 |
atattgaaatgttaacagtagaaga |
147 |
Q |
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| T |
7563390 |
atattgaaatgttaacagtagaaga |
7563366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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