View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1580_low_14 (Length: 404)

Name: NF1580_low_14
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1580_low_14
NF1580_low_14
[»] chr5 (3 HSPs)
chr5 (8-359)||(35913217-35913568)
chr5 (261-326)||(9715745-9715809)
chr5 (306-346)||(28009847-28009887)
[»] chr1 (3 HSPs)
chr1 (276-339)||(34181829-34181892)
chr1 (284-339)||(15013546-15013601)
chr1 (307-339)||(36332631-36332663)
[»] chr7 (4 HSPs)
chr7 (272-346)||(29780161-29780235)
chr7 (284-346)||(32018133-32018195)
chr7 (306-346)||(8681898-8681938)
chr7 (307-339)||(21557037-21557069)
[»] chr6 (4 HSPs)
chr6 (307-339)||(12268820-12268852)
chr6 (307-339)||(5613402-5613434)
chr6 (284-340)||(19753632-19753688)
chr6 (307-339)||(28149814-28149846)
[»] chr3 (2 HSPs)
chr3 (76-146)||(50338411-50338486)
chr3 (272-346)||(44145137-44145211)
[»] chr2 (2 HSPs)
chr2 (307-346)||(23054340-23054379)
chr2 (308-346)||(4772820-4772858)
[»] chr8 (1 HSPs)
chr8 (276-336)||(41371184-41371242)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 35913568 - 35913217
Alignment:
Q  8 cgaagatatgatggccgaccacgagtcagggtggataaggataactttctcatccttgcagaaatgatttgtaaggtgatgagtgtctcctctaactctt 107  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || |||||| || |||||||||||||||||||||||||||||    
T  35913568 cgaagatatgatggccaaccacgagttagggtggataaggataactttctcatccttacaaaaatgacttataaggtgatgagtgtctcctctaactctt 35913469  T
Q  108 atcaagaatcttatatatttgatatgaggcttgagtttt-cccagtacaccctctcacgcctagctagcattctttggtttggtgtggtgcgggtgcgtg 206  Q
    || |||| ||||||||||| |||||||| |||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35913468 ataaagagtcttatatattcgatatgagacttgagtttttcccaatacaccctctcacacctagctagcattctttggtttggtgtggtgcgggtgcgtg 35913369  T
Q  207 tatgtatatagtgggcagtctgatcgatatgctttgatatcatgttgattatgtctaactcactattataaaatcaacttgtaatgtgagaaatgtcttt 306  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||    
T  35913368 tatgtaaatagtgtgcagtctgatcgatatgctttgatatcatgttgattatgtctaactcactattataaaatcagcttataatatgataaatgtcttt 35913269  T
Q  307 tctttataaactcttatcaagagttatatctatatgatgtatcaagacttgag 359  Q
    ||||||||||||||||||| |||||||||| || ||||||||| |||||||||    
T  35913268 tctttataaactcttatcacgagttatatccatctgatgtatc-agacttgag 35913217  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 9715809 - 9715745
Alignment:
Q  261 ctaactcactattataaaatcaacttgtaatgtgagaaatgtcttttctttataaactcttatcaa 326  Q
    |||||||| | |||||||||| | |||||| ||||||||| | || ||||||||||||||||||||    
T  9715809 ctaactcatttttataaaatcgatttgtaaggtgagaaattt-ttatctttataaactcttatcaa 9715745  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 28009847 - 28009887
Alignment:
Q  306 ttctttataaactcttatcaagagttatatctatatgatgt 346  Q
    |||||||||||||||| ||||||||| ||||||| ||||||    
T  28009847 ttctttataaactcttctcaagagttctatctatctgatgt 28009887  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 34181829 - 34181892
Alignment:
Q  276 aaaatcaacttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatctat 339  Q
    ||||| ||||||||| |||||||||||||  | |||||||||| |||| |||||||||||||||    
T  34181829 aaaattaacttgtaaagtgagaaatgtctcatttttataaacttttattaagagttatatctat 34181892  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 15013601 - 15013546
Alignment:
Q  284 cttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatctat 339  Q
    ||||||| ||||||| |||||| |||||||||||| || |||||||| ||||||||    
T  15013601 cttgtaaggtgagaagtgtcttctctttataaactgttctcaagagtcatatctat 15013546  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 36332663 - 36332631
Alignment:
Q  307 tctttataaactcttatcaagagttatatctat 339  Q
    ||||||||||||||||||||||||| |||||||    
T  36332663 tctttataaactcttatcaagagttctatctat 36332631  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 29780235 - 29780161
Alignment:
Q  272 ttataaaatcaacttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatctatatgatgt 346  Q
    |||||||| | |||||||| ||||| | |||||  ||||||||||||||| |||||||| |||||||| ||||||    
T  29780235 ttataaaaccgacttgtaaggtgaggagtgtctcctctttataaactcttctcaagagtcatatctatttgatgt 29780161  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 32018133 - 32018195
Alignment:
Q  284 cttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatctatatgatgt 346  Q
    ||||||| ||||| | |||||  | |||||||||||||||||||||| |||||||| ||||||    
T  32018133 cttgtaaggtgaggagtgtctcatgtttataaactcttatcaagagtcatatctatttgatgt 32018195  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 8681938 - 8681898
Alignment:
Q  306 ttctttataaactcttatcaagagttatatctatatgatgt 346  Q
    |||||||||||||||||||||||||  ||||||| ||||||    
T  8681938 ttctttataaactcttatcaagagtcttatctatctgatgt 8681898  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 21557069 - 21557037
Alignment:
Q  307 tctttataaactcttatcaagagttatatctat 339  Q
    ||||||||||||||||||||||||| |||||||    
T  21557069 tctttataaactcttatcaagagttctatctat 21557037  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 12268852 - 12268820
Alignment:
Q  307 tctttataaactcttatcaagagttatatctat 339  Q
    |||||||||||||||||||||||||||||||||    
T  12268852 tctttataaactcttatcaagagttatatctat 12268820  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 5613402 - 5613434
Alignment:
Q  307 tctttataaactcttatcaagagttatatctat 339  Q
    |||||||||||||||||||||| ||||||||||    
T  5613402 tctttataaactcttatcaagaattatatctat 5613434  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 19753632 - 19753688
Alignment:
Q  284 cttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatctata 340  Q
    ||||||| ||||| | |||||| ||||||||||||||| ||||||||  ||||||||    
T  19753632 cttgtaaggtgaggagtgtcttctctttataaactcttctcaagagtcctatctata 19753688  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 339
Target Start/End: Complemental strand, 28149846 - 28149814
Alignment:
Q  307 tctttataaactcttatcaagagttatatctat 339  Q
    ||||||||||||||||||||||||| |||||||    
T  28149846 tctttataaactcttatcaagagttttatctat 28149814  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 50338411 - 50338486
Alignment:
Q  76 ttgtaaggtgatgagtgtctcctcta-----actcttatcaagaatcttatatatttgatatgaggcttgagtttt 146  Q
    ||||||||||| || |||||||||||     ||||||||||||| |||||| ||| ||||||||| ||||||||||    
T  50338411 ttgtaaggtgaagattgtctcctctatataaactcttatcaagagtcttatctatctgatatgagacttgagtttt 50338486  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 44145137 - 44145211
Alignment:
Q  272 ttataaaatcaacttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatctatatgatgt 346  Q
    |||||||| |||||| ||| ||||| | |||||  |||||||||||| |||||||||||  ||||||| ||||||    
T  44145137 ttataaaaccaacttataaggtgagtattgtctcctctttataaactattatcaagagtcttatctatctgatgt 44145211  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 23054379 - 23054340
Alignment:
Q  307 tctttataaactcttatcaagagttatatctatatgatgt 346  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  23054379 tctttataaactcttctcaagagttatatctatctgatgt 23054340  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 4772820 - 4772858
Alignment:
Q  308 ctttataaactcttatcaagagttatatctatatgatgt 346  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  4772820 ctttataaactcttatcaagagtcatatctatctgatgt 4772858  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 41371184 - 41371242
Alignment:
Q  276 aaaatcaacttgtaatgtgagaaatgtcttttctttataaactcttatcaagagttatatc 336  Q
    |||||||  |||||| ||||| ||||||||  |||||||||||||||||||||||| ||||    
T  41371184 aaaatcagtttgtaaggtgaggaatgtctt--ctttataaactcttatcaagagttctatc 41371242  T

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