View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_15 (Length: 404)
Name: NF1580_low_15
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 5655646 - 5656037
Alignment:
| Q |
1 |
tctcttgaaaatttcactcaagaaaagtgttataaactactatagagcattggaaatatgcttacgcctattgttataaactattgaaaatatgcttatg |
100 |
Q |
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| T |
5655646 |
tctcttgaaaatttcactcaagaaaagtgttataaactactatagagcattgaaaatatgcttatgcctattgttataaactattgaaaatatgcttatg |
5655745 |
T |
|
| Q |
101 |
cattgaaaagtgttatggactattgttatatttaacttgttacttgctttagcagagcagttaccgtgagtacttgaagctgaaagcaagatttgaatct |
200 |
Q |
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| T |
5655746 |
cattgaaaagtgttatggactattgttatatttaacttgttacttgctttagcagagcagttaccgtgagtacttgaagctgaaagcaagatttgaatct |
5655845 |
T |
|
| Q |
201 |
cttcaaaggactcaaaggtaaatatattaacatgtgtgagtttaaatgttcaaactatataatatatatgtttttgaagtgtttcattaagaccatggca |
300 |
Q |
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| T |
5655846 |
cttcaaaggactcaaaggtaaatatattaacatgtgtgagtgtaaatgttcaaact-----atatatatgtttttgaagtgtttcattaagaccatggca |
5655940 |
T |
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| Q |
301 |
ttttgttccttaattgcagaaaccttcttggtgaagacttaggtccattaggtaccaaagatcttgagcagcttgaacgccaacttgattcatctct |
397 |
Q |
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| T |
5655941 |
ttttgttccttaattgcagaaaccttcttggtgaagacttaggtccattaggtaccaaagatcttgagcagcttgaacgccaacttgattcatctct |
5656037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 5232068 - 5232125
Alignment:
| Q |
151 |
agcagagcagttaccgtgagtacttgaagctgaaagcaagatttgaatctcttcaaag |
208 |
Q |
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| T |
5232068 |
agcagagcagttaccgtgaatacttgaagctgaaacaaagatttgaaaatcttcaaag |
5232125 |
T |
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