View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_16 (Length: 387)
Name: NF1580_low_16
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 386
Target Start/End: Original strand, 47620086 - 47620458
Alignment:
| Q |
14 |
gaagagtaattgaaataaagaatgaaaggtgaaaatgtctggaatggtatgtttaattaaatagaagtctaataataagggattcagttaatttggtgtt |
113 |
Q |
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| T |
47620086 |
gaagagtaattgaaataaagaatgaaaggtgaaaatgtctggaatggtatgtttaattaaatagaagtctaataataagggattcagttaatttggtgtt |
47620185 |
T |
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| Q |
114 |
tgatattctcaccattcattttttgtaactacctgcagcataatacacgcacctgcgttaattaatttagatagagtgagttgtataataagcattgttt |
213 |
Q |
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| T |
47620186 |
tgatattctcaccattcattttttgtaactacctgcagcataatacacgcacctgcgttaattaatttagatagagtgagttgtataataagcattgttt |
47620285 |
T |
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| Q |
214 |
tgaagtaaatttaaattctacaatctattcttctattctatgttgtggctacctaaattcggaaggtgatgctacatttggggtcataaaatcttgttca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47620286 |
tgaagtaaatttaaattctacaatctattcttctattctatgttgtggctacctaaattcggaaggtgatgctacatttggggttataaaatcttgttca |
47620385 |
T |
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| Q |
314 |
aattgtagagtatgctttggatgaaccgtattttctaagataaacagtgcccaaaaatatttatatccttcat |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
47620386 |
aattgtagagtatgctttggatgaaccgtattttctaagataaacagtgcctaaaaatatctatatccttcat |
47620458 |
T |
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