View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1580_low_17 (Length: 375)

Name: NF1580_low_17
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1580_low_17
NF1580_low_17
[»] chr6 (4 HSPs)
chr6 (211-358)||(2471646-2471793)
chr6 (90-205)||(6608385-6608500)
chr6 (149-210)||(6606650-6606711)
chr6 (149-207)||(6607608-6607666)
[»] chr5 (10 HSPs)
chr5 (211-358)||(8981113-8981260)
chr5 (61-210)||(38943087-38943240)
chr5 (78-207)||(19033580-19033709)
chr5 (78-173)||(37922737-37922832)
chr5 (90-205)||(2332263-2332379)
chr5 (90-207)||(19033107-19033225)
chr5 (108-207)||(37923443-37923543)
chr5 (149-207)||(38943658-38943716)
chr5 (149-207)||(2331446-2331504)
chr5 (168-210)||(7442705-7442747)
[»] chr1 (15 HSPs)
chr1 (236-358)||(573972-574095)
chr1 (61-207)||(33659860-33660010)
chr1 (61-212)||(28283758-28283913)
chr1 (121-207)||(26244444-26244530)
chr1 (88-206)||(37335008-37335126)
chr1 (112-207)||(50616003-50616099)
chr1 (112-207)||(50623831-50623927)
chr1 (149-207)||(4426249-4426307)
chr1 (78-173)||(50615097-50615190)
chr1 (78-173)||(50622925-50623018)
chr1 (108-182)||(28284552-28284627)
chr1 (152-207)||(47213887-47213942)
chr1 (168-210)||(33659391-33659433)
chr1 (311-349)||(47683501-47683539)
chr1 (90-173)||(37334506-37334590)
[»] chr7 (6 HSPs)
chr7 (61-210)||(28870317-28870470)
chr7 (78-207)||(7475028-7475157)
chr7 (61-182)||(47514338-47514463)
chr7 (108-207)||(47513546-47513646)
chr7 (149-207)||(28869839-28869897)
chr7 (149-207)||(44185801-44185859)
[»] chr4 (13 HSPs)
chr4 (211-358)||(27134844-27134992)
chr4 (61-207)||(50646530-50646680)
chr4 (78-207)||(29893837-29893966)
chr4 (61-207)||(33394914-33395064)
chr4 (78-207)||(48542310-48542439)
chr4 (78-207)||(44087987-44088116)
chr4 (90-207)||(33394462-33394580)
chr4 (108-205)||(40260572-40260670)
chr4 (90-207)||(29893346-29893464)
chr4 (90-207)||(50646061-50646177)
chr4 (90-207)||(48541399-48541517)
chr4 (106-161)||(43323536-43323591)
chr4 (123-207)||(43326011-43326095)
[»] chr3 (17 HSPs)
chr3 (61-195)||(13648427-13648561)
chr3 (78-207)||(10030479-10030608)
chr3 (61-207)||(51800954-51801105)
chr3 (61-207)||(27042988-27043137)
chr3 (61-207)||(46416036-46416186)
chr3 (61-185)||(38507781-38507909)
chr3 (90-207)||(10029997-10030115)
chr3 (90-207)||(10257720-10257838)
chr3 (90-207)||(10181350-10181468)
chr3 (90-207)||(10124918-10125036)
chr3 (149-207)||(51801489-51801547)
chr3 (150-207)||(13647693-13647750)
chr3 (149-210)||(33464956-33465017)
chr3 (109-207)||(38506985-38507084)
chr3 (149-203)||(27043912-27043966)
chr3 (108-203)||(33464155-33464251)
chr3 (152-206)||(34266839-34266893)
[»] scaffold0022 (2 HSPs)
scaffold0022 (78-207)||(60341-60470)
scaffold0022 (90-173)||(59813-59897)
[»] chr8 (4 HSPs)
chr8 (78-207)||(21570910-21571039)
chr8 (78-207)||(43139152-43139281)
chr8 (90-207)||(21570419-21570537)
chr8 (152-207)||(42840449-42840504)
[»] chr2 (7 HSPs)
chr2 (61-207)||(38825873-38826023)
chr2 (78-210)||(40133670-40133802)
chr2 (90-205)||(1156137-1156253)
chr2 (136-207)||(2283631-2283702)
chr2 (111-205)||(40129176-40129271)
chr2 (136-207)||(1156930-1157001)
chr2 (90-173)||(2285557-2285641)
[»] scaffold0072 (2 HSPs)
scaffold0072 (90-205)||(16242-16357)
scaffold0072 (149-212)||(17041-17104)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 211 - 358
Target Start/End: Original strand, 2471646 - 2471793
Alignment:
Q  211 ctcataaacagaacaggcnnnnnnngagaccacctgtgcctcaaaaaagataaggccaccgcttctgtctctttgctactagtgttgctaggcatcttat 310  Q
    ||||||||||||||||||       |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  2471646 ctcataaacagaacaggcaaaaaaagagaccacctatgcctcaaaaaagacaaggccaccgcttctgtctctttgctactactgttactaggcatcttat 2471745  T
Q  311 aaaccaccatcattagctcactatattgcaagcatgtgatcatatatt 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2471746 aaaccaccatcattagctcactatattgcaagcatgtgatcatatatt 2471793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 6608385 - 6608500
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaat 189  Q
    ||||||||| |||||   ||||||||| ||||||||||| ||| ||||||  ||| || ||||||||||||||||||||||||| | ||||||| |||||    
T  6608385 attataattaaatagagctataaattggaatataaaatgtaggatgtacaactaatagcaaataaaacaaaattgatctaagatggggcaatttaacaat 6608484  T
Q  190 tgccccatgctaaaac 205  Q
    || |||||||||||||    
T  6608485 tgtcccatgctaaaac 6608500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 6606711 - 6606650
Alignment:
Q  149 aaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactcacc 210  Q
    ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  6606711 aaataaaacaaaattgatctaagttggggcaatttcacaattgccccatgctaaaactcacc 6606650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 6607666 - 6607608
Alignment:
Q  149 aaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    |||||||| |||||||||||||| | | |||||||||||||||||||||||||||||||    
T  6607666 aaataaaataaaattgatctaagttggggcaatttcacaattgccccatgctaaaactc 6607608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 211 - 358
Target Start/End: Complemental strand, 8981260 - 8981113
Alignment:
Q  211 ctcataaacagaacaggcnnnnnnngagaccacctgtgcctcaaaaaagataaggccaccgcttctgtctctttgctactagtgttgctaggcatcttat 310  Q
    ||||||||||||||||||       |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  8981260 ctcataaacagaacaggcaaaaaaagagaccacctatgcctcaaaaaagacaaggccaccgcttctgtctctttgctactactgttactaggcatcttat 8981161  T
Q  311 aaaccaccatcattagctcactatattgcaagcatgtgatcatatatt 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8981160 aaaccaccatcattagctcactatattgcaagcatgtgatcatatatt 8981113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 61 - 210
Target Start/End: Complemental strand, 38943240 - 38943087
Alignment:
Q  61 taatgtatttacaagtaaatt----tgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaa 156  Q
    |||||||||||||||||||||    ||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||  ||||||||    
T  38943240 taatgtatttacaagtaaattaatttgagtcaaattataattgagtagaactataaattggaatataaaatgcagggtgtacatgtaacaacaaataaaa 38943141  T
Q  157 caaaattgatctaagatagagcaatttcacaattgccccatgctaaaactcacc 210  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  38943140 caaaattgatctaagatggggcaatttcacaattgccccatgctaaaactcacc 38943087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 19033580 - 19033709
Alignment:
Q  78 aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagag 177  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |      
T  19033580 aatttgagtcaaattataattgagtaggattataaattgaaatataaaatgtagggtgtacatgtaacagcaaataaaataaaattgatctaagatggga 19033679  T
Q  178 caatttcacaattgccccatgctaaaactc 207  Q
    ||||||||||||||| ||||||||||||||    
T  19033680 caatttcacaattgctccatgctaaaactc 19033709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 37922832 - 37922737
Alignment:
Q  78 aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagat 173  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  37922832 aatttgagtcaaattataattgagtaggactataaattgaaatataaaatgcagggtgtacatataacagcaaataaaacaaaattgatctaagat 37922737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 2332263 - 2332379
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaat-gcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaa 188  Q
    ||||||||| |||||   ||||||||| |||||||||| | ||| ||||||  ||| || |||||||||||||||||| |||||| ||||||||| ||||    
T  2332263 attataattaaatagagctataaattggaatataaaattgtaggatgtacaactaatagcaaataaaacaaaattgatttaagatggagcaatttaacaa 2332362  T
Q  189 ttgccccatgctaaaac 205  Q
    |||||||||||||||||    
T  2332363 ttgccccatgctaaaac 2332379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 19033225 - 19033107
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaa 188  Q
    ||||||| |||||| || |||||||| |||||||||| | |||| ||||||  ||| || ||||||||||||||||||||||||| | ||| ||| ||||    
T  19033225 attataaatgaatatgactataaattaaaatataaaaatacaggatgtacaactaatagcaaataaaacaaaattgatctaagatggggcagtttgacaa 19033126  T
Q  189 ttgccccatgctaaaactc 207  Q
    ||||||| |||||||||||    
T  19033125 ttgccccttgctaaaactc 19033107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 37923443 - 37923543
Alignment:
Q  108 tataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaact 206  Q
    ||||||||| ||||||||| || |||||| |||  ||| || ||||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||    
T  37923443 tataaattggaatataaaaatgtagggtggacaactaatagcaaataaaacaaaattgatctaagatggggaaatttgacaattgccccatgctaaaact 37923542  T
Q  207 c 207  Q
    |    
T  37923543 c 37923543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 38943658 - 38943716
Alignment:
Q  149 aaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||    
T  38943658 aaataaaacaaaattgatctaagatggggcaatttgacaattgccccatgctaaaactc 38943716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 2331504 - 2331446
Alignment:
Q  149 aaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    |||||||| |||||||||||||| | | |||||||||||||||||||||||||||||||    
T  2331504 aaataaaataaaattgatctaagttggggcaatttcacaattgccccatgctaaaactc 2331446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 7442747 - 7442705
Alignment:
Q  168 taagatagagcaatttcacaattgccccatgctaaaactcacc 210  Q
    |||||||| ||||||||||||||  ||||||||||||||||||    
T  7442747 taagatagggcaatttcacaattagcccatgctaaaactcacc 7442705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 236 - 358
Target Start/End: Original strand, 573972 - 574095
Alignment:
Q  236 gagaccacctgtgcctcaaaaaagataaggccaccgcttctgtctctttgctactagtgttgctaggcatc-ttataaaccaccatcattagctcactat 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||    
T  573972 gagaccacctgtgcctcaaaaaagataaggccaccgcttctgtctctttgctactactgttactaggcatctttataaaccaccatcattagctcactat 574071  T
Q  335 attgcaagcatgtgatcatatatt 358  Q
    ||||||||||||||||||||||||    
T  574072 attgcaagcatgtgatcatatatt 574095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 61 - 207
Target Start/End: Original strand, 33659860 - 33660010
Alignment:
Q  61 taatgtatttacaagtaaatt----tgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaa 156  Q
    |||||||||||||||||||||    ||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||  ||||||||    
T  33659860 taatgtatttacaagtaaattaatttgaatcaaattataattgagtagggttataaattggaatataaaatgcagggtgtacatgtaacaacaaataaaa 33659959  T
Q  157 caaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  33659960 caaaattgatctaagattgggcaatttcacaattgccccatgctaaaactc 33660010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 28283913 - 28283758
Alignment:
Q  61 taatgtatttacaagtaaatt----tgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaa 156  Q
    |||||||||||||||||||||    ||| ||||||||||||||| |||   ||||||||| ||||||||||||||| |||||||||||||  ||||||||    
T  28283913 taatgtatttacaagtaaattaatttgaatcaaattataattgagtagagctataaattggaatataaaatgcaggatgtacatgtaacaacaaataaaa 28283814  T
Q  157 caaaattgatctaagatagagcaatttcacaattgccccatgctaaaactcaccct 212  Q
     |||||||||||||||| |  |||||||||||||||||||||||||||||| ||||    
T  28283813 taaaattgatctaagatgggacaatttcacaattgccccatgctaaaactcgccct 28283758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 26244444 - 26244530
Alignment:
Q  121 ataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  26244444 ataaaatgcagggtgtacatgtaacaacaaataaaacaaaattgatctaagatggggcaatttcacaattaccccatgctaaaactc 26244530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 88 - 206
Target Start/End: Original strand, 37335008 - 37335126
Alignment:
Q  88 aaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcaca 187  Q
    ||||||||||||||||||  ||||||||  ||||||||||||| | |||| |||||  || ||||||||||||||||||||||||| ||||||||| | |    
T  37335008 aaattataattgaatagggctataaattagaatataaaatgcatgatgtatatgtagtagcaaataaaacaaaattgatctaagatggagcaatttgaga 37335107  T
Q  188 attgccccatgctaaaact 206  Q
    ||||||||||||| |||||    
T  37335108 attgccccatgctgaaact 37335126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 50616003 - 50616099
Alignment:
Q  112 aattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    ||||||||||||||| |||| ||||||||  ||| |  ||||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||    
T  50616003 aattgaaatataaaaatgcaaggtgtacagctaataccaaataaaacaaaattgatctaagatggggcaatttgacaattgccccatactaaaactc 50616099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 50623831 - 50623927
Alignment:
Q  112 aattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    ||||||||||||||| |||| ||||||||  ||| |  ||||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||    
T  50623831 aattgaaatataaaaatgcaaggtgtacagctaataccaaataaaacaaaattgatctaagatggggcaatttgacaattgccccatactaaaactc 50623927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 4426307 - 4426249
Alignment:
Q  149 aaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    ||||||||||||||||||||||||| ||| |||||  ||||||||| ||||||||||||    
T  4426307 aaataaaacaaaattgatctaagatggagtaatttgtcaattgccctatgctaaaactc 4426249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 50615190 - 50615097
Alignment:
Q  78 aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagat 173  Q
    ||||||||||||||||||||||| |||   | ||||||  ||||||||||| | ||||||||||||  || |||||||||||| ||||| ||||||    
T  50615190 aatttgagtcaaattataattgagtagc--tctaaattagaatataaaatgtaaggtgtacatgtagtagcaaataaaacaaagttgatataagat 50615097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 50623018 - 50622925
Alignment:
Q  78 aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagat 173  Q
    ||||||||||||||||||||||| |||   | ||||||  ||||||||||| | ||||||||||||  || |||||||||||| ||||| ||||||    
T  50623018 aatttgagtcaaattataattgagtagc--tctaaattagaatataaaatgtaaggtgtacatgtagtagcaaataaaacaaagttgatataagat 50622925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 28284552 - 28284627
Alignment:
Q  108 tataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatt 182  Q
    ||||||||||||||||||| |||| |||| |||  ||| || ||||||||||||||||||||||||| | ||||||    
T  28284552 tataaattgaaatataaaaatgcaaggtggacagctaatagcaaataaaacaaaattgatctaagatggggcaatt 28284627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 47213942 - 47213887
Alignment:
Q  152 taaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    ||||||||||||||| |||||| ||| ||||| ||||||  |||||||||||||||    
T  47213942 taaaacaaaattgatataagatggagaaatttgacaatttacccatgctaaaactc 47213887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 33659433 - 33659391
Alignment:
Q  168 taagatagagcaatttcacaattgccccatgctaaaactcacc 210  Q
    |||||| ||||||||| |||||||||| |||||||||||||||    
T  33659433 taagatggagcaatttaacaattgccctatgctaaaactcacc 33659391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 47683539 - 47683501
Alignment:
Q  311 aaaccaccatcattagctcactatattgcaagcatgtga 349  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  47683539 aaaccaccatcattagctcactacatcgcaagcatgtga 47683501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 37334590 - 37334506
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagat 173  Q
    ||||||| | |||| || ||||| || |||||||||| |||| ||||||||  ||| |  |||||||||||||||||||||||||    
T  37334590 attataaataaatatgactataatttaaaatataaaaatgcaaggtgtacaactaataccaaataaaacaaaattgatctaagat 37334506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 61 - 210
Target Start/End: Original strand, 28870317 - 28870470
Alignment:
Q  61 taatgtatttacaagtaaatt----tgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaa 156  Q
    |||||||||||||||||||||    ||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||  ||||||||    
T  28870317 taatgtatttacaagtaaattaatttgagtcaaattataattgagtagaactataaattggaatataaaatgcagggtgtacatgtaacaacaaataaaa 28870416  T
Q  157 caaaattgatctaagatagagcaatttcacaattgccccatgctaaaactcacc 210  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  28870417 caaaattgatctaagatggagcaatttcacaattaccccatgctaaaactcacc 28870470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 7475157 - 7475028
Alignment:
Q  78 aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagag 177  Q
    ||||||||||||||||||||| |||||| |||||||||  |||||||||| || |||||| ||||||||| ||||||||||||||| ||||||||| | |    
T  7475157 aatttgagtcaaattataattaaatagggttataaattagaatataaaatacatggtgtatatgtaacagcaaataaaacaaaattaatctaagatgggg 7475058  T
Q  178 caatttcacaattgccccatgctaaaactc 207  Q
     ||||||| |||||||||||||||||||||    
T  7475057 taatttcataattgccccatgctaaaactc 7475028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 47514338 - 47514463
Alignment:
Q  61 taatgtatttacaagtaaatt----tgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaa 156  Q
    |||||||||||||||||||||    |||||||||||| |||||| || || ||||||||  |||||||||||||||||||||||||||||| ||||||||    
T  47514338 taatgtatttacaagtaaattaatttgagtcaaattacaattgagtatgactataaattagaatataaaatgcagggtgtacatgtaacagcaaataaaa 47514437  T
Q  157 caaaattgatctaagatagagcaatt 182  Q
    ||||||||||||||||| | ||||||    
T  47514438 caaaattgatctaagatggggcaatt 47514463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 47513646 - 47513546
Alignment:
Q  108 tataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaact 206  Q
    ||||||||||||| ||||| || |||||| |||  ||| || ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  47513646 tataaattgaaatgtaaaaatgtagggtggacaactaatagcaaataaaacaaaattgatctaagatggggcaatttgacaattgccccatgctaaaact 47513547  T
Q  207 c 207  Q
    |    
T  47513546 c 47513546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 28869897 - 28869839
Alignment:
Q  149 aaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||    
T  28869897 aaataaaacaaaattgatctaagatggggcaatttgacaattgccccatgctaaaactc 28869839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 44185801 - 44185859
Alignment:
Q  149 aaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    |||||||| |||||||||||||||| |  |||||| |||||||||||||||||||||||    
T  44185801 aaataaaataaaattgatctaagatgggacaatttgacaattgccccatgctaaaactc 44185859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 9e-52; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 211 - 358
Target Start/End: Original strand, 27134844 - 27134992
Alignment:
Q  211 ctcataaacagaacaggcnnnnnnngagaccacctgtgcctcaaaaaa-gataaggccaccgcttctgtctctttgctactagtgttgctaggcatctta 309  Q
    ||||||||||||||||||       |||||||||| |||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||||||||    
T  27134844 ctcataaacagaacaggcaaaaaaagagaccacctatgcctcaaaaaaagacaaggccaccgcttctgtctctttgctactactgttactaggcatctta 27134943  T
Q  310 taaaccaccatcattagctcactatattgcaagcatgtgatcatatatt 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27134944 taaaccaccatcattagctcactatattgcaagcatgtgatcatatatt 27134992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 61 - 207
Target Start/End: Original strand, 50646530 - 50646680
Alignment:
Q  61 taatgtatttacaagtaaatt----tgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaa 156  Q
    |||||||||||||||||||||    ||||||||||||||||||| ||||| ||||||||  |||||||||| ||||||||||||||||||| ||||||||    
T  50646530 taatgtatttacaagtaaattaatttgagtcaaattataattgagtaggactataaattagaatataaaatacagggtgtacatgtaacagcaaataaaa 50646629  T
Q  157 caaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  50646630 caaaattgatttaagatggagcaatttcacaattgccccatgctaaaactc 50646680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 29893837 - 29893966
Alignment:
Q  78 aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagag 177  Q
    |||||||||||||||||||||||||| |  ||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||||||||||||| | |    
T  29893837 aatttgagtcaaattataattgaataaggctataaattgaaatataaaatgcaggatgtaaatgtaacagcaaataaaataaaattgatctaagatgggg 29893936  T
Q  178 caatttcacaattgccccatgctaaaactc 207  Q
    ||||||||||||||||||||||||||||||    
T  29893937 caatttcacaattgccccatgctaaaactc 29893966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 61 - 207
Target Start/End: Original strand, 33394914 - 33395064
Alignment:
Q  61 taatgtatttacaagtaaatt----tgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaa 156  Q
    |||||||||||||||||||||    ||||||||||||||||||| |||   ||||||||  |||||||||||||||||||||||||||||  ||||||||    
T  33394914 taatgtatttacaagtaaattaatttgagtcaaattataattgagtagagctataaattagaatataaaatgcagggtgtacatgtaacaacaaataaaa 33395013  T
Q  157 caaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  33395014 caaaattgatctaagatggggcaatttcacaattgccccatgctaaaactc 33395064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 48542310 - 48542439
Alignment:
Q  78 aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagag 177  Q
    ||||||| ||||||||||||||| ||||  ||||||||| ||||||||||||||||||||||| ||| || |||||||| |||||||||||||||| |||    
T  48542310 aatttgaatcaaattataattgagtagggctataaattggaatataaaatgcagggtgtacatataatagcaaataaaataaaattgatctaagatggag 48542409  T
Q  178 caatttcacaattgccccatgctaaaactc 207  Q
    || |||||||||||||||||||||||||||    
T  48542410 cagtttcacaattgccccatgctaaaactc 48542439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 44087987 - 44088116
Alignment:
Q  78 aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagag 177  Q
    ||||||||||||||||||||||| ||||  ||||||||  ||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||  ||    
T  44087987 aatttgagtcaaattataattgagtagggctataaattagaatataaaatgcagggtgtacatgtagtaacaaataaaacaaaattgttctaagatgaag 44088086  T
Q  178 caatttcacaattgccccatgctaaaactc 207  Q
    |||||| |||||||||||||| ||||||||    
T  44088087 caatttgacaattgccccatgttaaaactc 44088116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 33394580 - 33394462
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaa 188  Q
    ||||||| |||||| |  ||||||||| ||||||||| |||||| ||||||  ||| || ||||||||||||||||||||||||| | ||||||| ||||    
T  33394580 attataaatgaatatggctataaattggaatataaaaatgcaggatgtacaactaatagcaaataaaacaaaattgatctaagatggggcaatttgacaa 33394481  T
Q  189 ttgccccatgctaaaactc 207  Q
    |||||||||||||||||||    
T  33394480 ttgccccatgctaaaactc 33394462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 40260670 - 40260572
Alignment:
Q  108 tataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaac 205  Q
    ||||||||| ||||||||| || |||||| |||  ||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  40260670 tataaattggaatataaaaatgtagggtggacaactaatagtaaataaaacaaaattgatctaagatggggcaatttcacaattgccccatgctaaaac 40260572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 29893464 - 29893346
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaa 188  Q
    ||||||| |||||| |  ||||||||| ||||||||| |||||| ||||||  ||| |  ||||||||||||||||||||||||| ||||||||| ||||    
T  29893464 attataaatgaatatggctataaattggaatataaaaatgcaggatgtacaattaataacaaataaaacaaaattgatctaagatggagcaatttgacaa 29893365  T
Q  189 ttgccccatgctaaaactc 207  Q
    ||| ||||| |||||||||    
T  29893364 ttgtcccatactaaaactc 29893346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 50646177 - 50646061
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaa 188  Q
    ||||||| |||||| || ||||||||||||||||||| | |||| ||||||  ||| ||||||||||||||  ||||| |||||| | ||||||| ||||    
T  50646177 attataaatgaatatgactataaattgaaatataaaaatacaggatgtacaattaatagtaaataaaacaa--ttgatttaagatggggcaatttgacaa 50646080  T
Q  189 ttgccccatgctaaaactc 207  Q
    |||| ||||||||||||||    
T  50646079 ttgctccatgctaaaactc 50646061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 48541517 - 48541399
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaa 188  Q
    ||||||| | |||| || |||||||| |||||||||| |||| |||| |||  ||| | ||||||||||||||||||||||| || ||||||||| ||||    
T  48541517 attataaataaatatgactataaattaaaatataaaaatgcaaggtggacaactaataataaataaaacaaaattgatctaatatggagcaatttgacaa 48541418  T
Q  189 ttgccccatgctaaaactc 207  Q
    ||  |||||||||||||||    
T  48541417 ttaacccatgctaaaactc 48541399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 43323591 - 43323536
Alignment:
Q  106 attataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaa 161  Q
    |||||| ||||||||||||||||||||||||| |||||| || |||||||||||||    
T  43323591 attatagattgaaatataaaatgcagggtgtaaatgtaatagcaaataaaacaaaa 43323536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 43326011 - 43326095
Alignment:
Q  123 aaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    ||||||||| ||| |||  ||| || |||||||||||||||||| |||||| |  || ||| ||||||| |||||||||||||||    
T  43326011 aaaatgcagtgtggacaactaatagcaaataaaacaaaattgatttaagatgggacagtttgacaattgtcccatgctaaaactc 43326095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 61 - 195
Target Start/End: Original strand, 13648427 - 13648561
Alignment:
Q  61 taatgtatttacaagtaaatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaa 160  Q
    |||||||| ||||||||||||||||||||||||||||| | || |  |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13648427 taatgtatatacaagtaaatttgagtcaaattataattaagtacggctataaattgaaatataaaatgcagggtgtacatgtaacaggaaataaaacaaa 13648526  T
Q  161 attgatctaagatagagcaatttcacaattgcccc 195  Q
    ||||||||||||| | |||||||||||||||||||    
T  13648527 attgatctaagatggggcaatttcacaattgcccc 13648561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 10030479 - 10030608
Alignment:
Q  78 aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagag 177  Q
    ||||||||||||||||||||||| ||||  ||||||||  |||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | |    
T  10030479 aatttgagtcaaattataattgagtagggctataaattagaatataaaatgcagggtgtacatgtaacatcaaataaaacaaaattgatctaagatgggg 10030578  T
Q  178 caatttcacaattgccccatgctaaaactc 207  Q
    |||||||||||||| |||||||||||||||    
T  10030579 caatttcacaattgtcccatgctaaaactc 10030608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 51801105 - 51800954
Alignment:
Q  61 taatgtatttacaagta----aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaa 156  Q
    ||||||||| |||||||    ||||||||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  51801105 taatgtattaacaagtaaattaatttgagtcaaattataattaaataaggctataaattgaaatataaaatgcagggtgtacatgtaacaacaaataaaa 51801006  T
Q  157 caaaattgatctaagatagagcaatttcacaa-ttgccccatgctaaaactc 207  Q
    ||||||||||||||||| | |||||||||||| ||||| |||||||||||||    
T  51801005 caaaattgatctaagatggggcaatttcacaatttgcctcatgctaaaactc 51800954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 27043137 - 27042988
Alignment:
Q  61 taatgtatttacaagta----aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaa 156  Q
    ||||||||||| |||||    |||||||||||||||| |||||| ||||  ||||||||| | ||||||||||||| |||||||||||||| ||||||||    
T  27043137 taatgtatttataagtaaattaatttgagtcaaatta-aattgagtagggctataaattggagtataaaatgcaggatgtacatgtaacagcaaataaaa 27043039  T
Q  157 caaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  27043038 caaaattgatttaagatggagcaatttcacaattgccccatgctaaaactc 27042988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 46416186 - 46416036
Alignment:
Q  61 taatgtatttacaagtaaatt----tgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaa 156  Q
    |||||||||||||||||||||    ||||||||||||||||||| |||   ||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  46416186 taatgtatttacaagtaaattaatttgagtcaaattataattgagtagagctataaattggaatataaaatgcaggatgtacatgtaacagcaaataaaa 46416087  T
Q  157 caaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    |||||||||| |||||| | ||||||    |||||||||||||||||||||    
T  46416086 caaaattgatttaagatggggcaattgtgaaattgccccatgctaaaactc 46416036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 38507781 - 38507909
Alignment:
Q  61 taatgtatttacaagtaaatt----tgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaa 156  Q
    |||||||||||||||||||||    ||||||||||||||||||| ||||| ||||||||| ||||||||||| | |||||| ||||||||| ||||||||    
T  38507781 taatgtatttacaagtaaattaatttgagtcaaattataattgagtaggactataaattggaatataaaatgtaaggtgtaaatgtaacagcaaataaaa 38507880  T
Q  157 caaaattgatctaagatagagcaatttca 185  Q
    ||||||||||||||||| | |||||||||    
T  38507881 caaaattgatctaagatggggcaatttca 38507909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 10030115 - 10029997
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaa 188  Q
    |||||||||||||| | || ||||||| ||||||||| | |||| ||||||  ||| || ||||||||||||||||||||||||||||||||||| ||||    
T  10030115 attataattgaatatggttgtaaattggaatataaaaattcaggatgtacaactaatagcaaataaaacaaaattgatctaagatagagcaatttgacaa 10030016  T
Q  189 ttgccccatgctaaaactc 207  Q
    |||||||||||||||||||    
T  10030015 ttgccccatgctaaaactc 10029997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 10257838 - 10257720
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaa 188  Q
    |||||||||||||| | |||||||||| ||||||||| | |||| ||||||  ||| || ||||||||||||||||||||||||||||||||||| ||||    
T  10257838 attataattgaatatggttataaattggaatataaaaattcaggatgtacaactaatagcaaataaaacaaaattgatctaagatagagcaatttgacaa 10257739  T
Q  189 ttgccccatgctaaaactc 207  Q
    ||||| |||||||||||||    
T  10257738 ttgcctcatgctaaaactc 10257720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 10181468 - 10181350
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaa 188  Q
    ||||||| ||||||   |||||||||| ||||||||| | |||| ||||||  ||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  10181468 attataaatgaatattgttataaattggaatataaaaattcaggatgtacaactaatagtaaataaaacaaaattgatctaagatggagcaatttgacaa 10181369  T
Q  189 ttgccccatgctaaaactc 207  Q
     ||||||||||||||||||    
T  10181368 ctgccccatgctaaaactc 10181350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 10125036 - 10124918
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaa 188  Q
    |||||||||||||| | |||||||||| ||||||||| | |||| ||||||  ||| || |||||||| ||||||||||||| ||||  |||||| ||||    
T  10125036 attataattgaatatggttataaattggaatataaaaattcaggatgtacaactaatagcaaataaaataaaattgatctaaaataggacaatttgacaa 10124937  T
Q  189 ttgccccatgctaaaactc 207  Q
    |||||| |||| |||||||    
T  10124936 ttgcccaatgccaaaactc 10124918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 51801489 - 51801547
Alignment:
Q  149 aaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||||    
T  51801489 aaataaaacaaaattgatctaagattgagtaatttgacaattgtcccatgctaaaactc 51801547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 13647750 - 13647693
Alignment:
Q  150 aataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    |||||||||||||||||||||||| | ||||||| |||||||||||||| ||||||||    
T  13647750 aataaaacaaaattgatctaagatggggcaatttgacaattgccccatgttaaaactc 13647693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 33464956 - 33465017
Alignment:
Q  149 aaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactcacc 210  Q
    |||||||| |||||||||||||| | | ||||||| ||||||||||||||||||||||||||    
T  33464956 aaataaaataaaattgatctaagttggggcaatttgacaattgccccatgctaaaactcacc 33465017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 38507084 - 38506985
Alignment:
Q  109 ataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatt-tcacaattgccccatgctaaaact 206  Q
    |||||||| ||||||||| ||||||||| |||  ||| || |||||||||||||||||||| |||| | |||||| ||| ||||||||||||||||||||    
T  38507084 ataaattggaatataaaaatgcagggtggacaactaatagcaaataaaacaaaattgatcttagatggggcaattgtca-aattgccccatgctaaaact 38506986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 27043912 - 27043966
Alignment:
Q  149 aaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaa 203  Q
    ||||||||||||||||||||||||||| ||||||| |||||| |||||| |||||    
T  27043912 aaataaaacaaaattgatctaagatagggcaatttgacaattaccccatactaaa 27043966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 33464251 - 33464155
Alignment:
Q  108 tataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaattg-ccccatgctaaa 203  Q
    ||||||||  ||||||||||| ||| ||||||  ||| || |||||||||||||||||| |||||| | ||||||| || |||| ||||||||||||    
T  33464251 tataaattagaatataaaatgtaggatgtacaactaatagcaaataaaacaaaattgatttaagatggggcaatttaacgattgcccccatgctaaa 33464155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 34266893 - 34266839
Alignment:
Q  152 taaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaact 206  Q
    |||||||||||||||||||||| | | ||||| ||||||  ||||||||||||||    
T  34266893 taaaacaaaattgatctaagatggggaaatttgacaatttgcccatgctaaaact 34266839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 60341 - 60470
Alignment:
Q  78 aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagag 177  Q
    ||||||||||||||||||||||| ||||| ||||||||  |||||||||| || ||||||||||||| || ||||||||||||||||||||||||| |||    
T  60341 aatttgagtcaaattataattgagtaggactataaattagaatataaaatacaaggtgtacatgtaatagcaaataaaacaaaattgatctaagatggag 60440  T
Q  178 caatttcacaattgccccatgctaaaactc 207  Q
    |||||| |||||||||||||||||||||||    
T  60441 caatttgacaattgccccatgctaaaactc 60470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 59897 - 59813
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagat 173  Q
    ||||||| | |||| || ||||| ||||||||||||| |||| ||||||||  ||| |  |||||||||||||||||||||||||    
T  59897 attataaataaatatgactataatttgaaatataaaaatgcaaggtgtacaactaataccaaataaaacaaaattgatctaagat 59813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 21570910 - 21571039
Alignment:
Q  78 aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagag 177  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||| |||||  |||||||||||||||||||||| |||| |    
T  21570910 aatttgagtcaaattataattgagtaggactataaattaaaatataaaatacagggtgtacatataacaacaaataaaacaaaattgatctaaaataggg 21571009  T
Q  178 caatttcacaattgccccatgctaaaactc 207  Q
    ||||||||||| ||||||||||||||||||    
T  21571010 caatttcacaaatgccccatgctaaaactc 21571039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 43139281 - 43139152
Alignment:
Q  78 aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagag 177  Q
    ||||||| ||||||||||||||| || |  ||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | |    
T  43139281 aatttgaatcaaattataattgagtatggctataaattggaatataaaatgcagggtgtacatctaacagcaaataaaacaaaattgatctaagatgggg 43139182  T
Q  178 caatttcacaattgccccatgctaaaactc 207  Q
    ||||||||||||||||||||||||||||||    
T  43139181 caatttcacaattgccccatgctaaaactc 43139152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 21570537 - 21570419
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaa 188  Q
    ||||||| | |||| | |||||||||| ||||||||| |||||| ||||||  ||| || ||||||||||||||||||||||||| | ||||||| ||||    
T  21570537 attataaataaatatggttataaattggaatataaaaatgcaggatgtacaactaatagcaaataaaacaaaattgatctaagattgggcaatttgacaa 21570438  T
Q  189 ttgccccatgctaaaactc 207  Q
    ||||||||| |||||||||    
T  21570437 ttgccccatactaaaactc 21570419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 42840504 - 42840449
Alignment:
Q  152 taaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    |||||||||||||||||||||| ||| ||||| ||||||  |||||||||||||||    
T  42840504 taaaacaaaattgatctaagatggagaaatttgacaatttgcccatgctaaaactc 42840449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 61 - 207
Target Start/End: Original strand, 38825873 - 38826023
Alignment:
Q  61 taatgtatttacaagtaaatt----tgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaa 156  Q
    |||||||||||||||||||||    ||||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  38825873 taatgtatttacaagtaaattaatttgagtcaaattataattgagtagagctataaattgaaatataaaatgcagggtgtacatgtaacatcaaataaaa 38825972  T
Q  157 caaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    ||||||| |||||||||  |||||||||||||| ||||||||| |||||||    
T  38825973 caaaatttatctaagatgaagcaatttcacaatcgccccatgcaaaaactc 38826023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 40133670 - 40133802
Alignment:
Q  78 aatttgagtcaaattataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagag 177  Q
    ||||||| ||||||||||||||| ||||  ||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||| |||||| | |    
T  40133670 aatttgaatcaaattataattgagtagggctataaattggaatataaaatgcagggtgtacatctaacagcaaataaaacaaaattgatttaagatgggg 40133769  T
Q  178 caatttcacaattgccccatgctaaaactcacc 210  Q
    ||||||||||| |||||| |||||||| |||||    
T  40133770 caatttcacaactgccccgtgctaaaagtcacc 40133802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 1156253 - 1156137
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaatgc-agggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaa 188  Q
    ||||||||| |||||   ||||||||||||||||||||   ||  ||||||  ||| || |||||||||||||||||| |||||| || |||||| ||||    
T  1156253 attataattaaatagagctataaattgaaatataaaattatagaatgtacaattaatagcaaataaaacaaaattgatttaagatggaacaatttaacaa 1156154  T
Q  189 ttgccccatgctaaaac 205  Q
    |||||||||||||||||    
T  1156153 ttgccccatgctaaaac 1156137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 2283702 - 2283631
Alignment:
Q  136 tacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    |||| |||| || ||||||||||||||||||||||| | | |||||||||||||||| ||||||||||||||    
T  2283702 tacaagtaatagcaaataaaacaaaattgatctaagttggggcaatttcacaattgctccatgctaaaactc 2283631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 40129271 - 40129176
Alignment:
Q  111 aaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaac 205  Q
    ||||| |||||||||| | ||||||| |||  ||| || |||||||| |||||||||||||||| ||||||||| |||||| ||||||||||||||    
T  40129271 aaattaaaatataaaaatacagggtggacaactaatagcaaataaaagaaaattgatctaagatggagcaatttgacaattaccccatgctaaaac 40129176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 1156930 - 1157001
Alignment:
Q  136 tacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactc 207  Q
    |||| |||| || ||||||||||||||||||||||| | |   ||||||||||||| |||||||||||||||    
T  1156930 tacaagtaatagcaaataaaacaaaattgatctaagttgggataatttcacaattgtcccatgctaaaactc 1157001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 2285557 - 2285641
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaa-tgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagat 173  Q
    ||||||||| |||||   ||||||||||||||||||| || ||| ||||||  ||| || |||||||||||||||||| ||||||    
T  2285557 attataattaaatagagctataaattgaaatataaaattgtaggatgtacaactaatagcaaataaaacaaaattgatttaagat 2285641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 16357 - 16242
Alignment:
Q  90 attataattgaataggattataaattgaaatataaaatgcagggtgtacatgtaacagtaaataaaacaaaattgatctaagatagagcaatttcacaat 189  Q
    ||||||||| |||||   ||||||||||||||||||||| ||| ||||||  ||  || ||||||||||||||||||||||||| || |||||| |||||    
T  16357 attataattaaatagagctataaattgaaatataaaatgtaggatgtacagctagtagcaaataaaacaaaattgatctaagatggaccaatttaacaat 16258  T
Q  190 tgccccatgctaaaac 205  Q
    || || ||||||||||    
T  16257 tgtcctatgctaaaac 16242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 17041 - 17104
Alignment:
Q  149 aaataaaacaaaattgatctaagatagagcaatttcacaattgccccatgctaaaactcaccct 212  Q
    ||||||||||||||||||||||| |   ||||||||||||||| ||||||||||||||||||||    
T  17041 aaataaaacaaaattgatctaagttgaggcaatttcacaattgtcccatgctaaaactcaccct 17104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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