View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_19 (Length: 357)
Name: NF1580_low_19
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 68 - 342
Target Start/End: Original strand, 11351289 - 11351563
Alignment:
| Q |
68 |
ctatttggggttttcttttagttgttccgcctatatacgacgcctttgtctagtaatttttggatgatcagtctctgttcatcttgtgcagagaccgaga |
167 |
Q |
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| T |
11351289 |
ctatttgggttttttttttagtcgttccgcctatatacgacgcctttgtctagtaatttttggatgatcagtctctgttcatcttgtgcagagaccgaga |
11351388 |
T |
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| Q |
168 |
aaagcaaatggttaaactttttatgttctaggaatttaaacgaagtattaagatgttttgtgtttttgaagggcctggttgttcttcggttggagctgga |
267 |
Q |
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| T |
11351389 |
aaagcaaatggttaaactttttatgttctaggaatttaaacgaagtattaagatgttttgtgtttttgaagggcctggttgttcttcggttggagctgga |
11351488 |
T |
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| Q |
268 |
gcttttgtggagcatggtccattcaaaccaactaaaaatggtcttattaaaaatgattacagttggaacaaaggt |
342 |
Q |
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| T |
11351489 |
gcttttgtggagcatggtccattcaaaccaactaaaaatggtcttattaaaaatgattacagttggaacaaaggt |
11351563 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 42638253 - 42638195
Alignment:
| Q |
68 |
ctatttggggttttcttttagttgttccgcctatatacgacgcctttgtctagtaattt |
126 |
Q |
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| T |
42638253 |
ctatttgaagttttcttttaagtgttccgcctatatacggcacctttgtcttgtaattt |
42638195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 34576109 - 34576044
Alignment:
| Q |
98 |
ctatatacgacgcctttgtctagtaatttttggatgatcagtctctgttcatcttgtgcagagacc |
163 |
Q |
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| T |
34576109 |
ctatatacgacacctttgtcttgtagtttatggattatcggtttctgttcgtcttgtgcagggacc |
34576044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 2878030 - 2878083
Alignment:
| Q |
83 |
ttttagttgttccgcctatatacgacgcctttgtctagtaatttttggatgatca |
137 |
Q |
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| T |
2878030 |
ttttagatgttccgcctatatacaacgcctttattta-taatttttggatgatca |
2878083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 5746984 - 5747017
Alignment:
| Q |
83 |
ttttagttgttccgcctatatacgacgcctttgt |
116 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
5746984 |
ttttaggtgttccgcctatatacgacgcctttgt |
5747017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 34345869 - 34345833
Alignment:
| Q |
78 |
ttttcttttagttgttccgcctatatacgacgccttt |
114 |
Q |
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||||| ||||| ||||||||||||||||||||||||| |
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| T |
34345869 |
ttttcctttaggtgttccgcctatatacgacgccttt |
34345833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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