View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_20 (Length: 351)
Name: NF1580_low_20
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 7288219 - 7287889
Alignment:
| Q |
13 |
aatataagacatgaccctgtttattcagttttaaattaataagaacagtaatacattaagaagacctgaccaaaacattcaatacaatacaagacatgat |
112 |
Q |
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| T |
7288219 |
aatataagacatgaccctgtttattcaattttaaattaataagaacagtaatacattaagaagacctgaccaaaacattcaatacaatacaagacatgat |
7288120 |
T |
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| Q |
113 |
ccttacaaaaaattttcattataatctttctcaaatcagttgcatccatagagcaatgagtatcaagatggtaaataacccc-ctttcaatgtcaacatt |
211 |
Q |
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| T |
7288119 |
ccttacaat---ttttcattataatctttctcaaatcagttgcatccatagagcagtgagtatcaagatggtaaataacccctctttcaatgtcaacatt |
7288023 |
T |
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| Q |
212 |
cataaaatcaagtgtttataaattcaagtgttaaaatcaactttttcacagtcgtatttatgtaccaaataaattaattttactcacaaacttgagttta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7288022 |
cataaaatcaagtgtttataaattcaagtgttaaaatcaactttttcacagtcgtatttatgtaccaaataaattaattttactcacaaacttgagttta |
7287923 |
T |
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| Q |
312 |
tggtaaagaggcatccaacgagaacaatacttta |
345 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
7287922 |
tggtaaagaggcatccaacgagaacaatacttta |
7287889 |
T |
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