View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1580_low_21 (Length: 347)

Name: NF1580_low_21
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1580_low_21
NF1580_low_21
[»] chr8 (1 HSPs)
chr8 (38-333)||(45146023-45146312)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 38 - 333
Target Start/End: Complemental strand, 45146312 - 45146023
Alignment:
Q  38 tgtccacaaatatagtagaatttgtaaccatatatcattaggaagtgatgatgaacagaccagaccggttacatggtttgaattgttgctcccatattgc 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     ||||||||||||||||||||||||||||||||||    
T  45146312 tgtccacaaatatagtagaatttgtaaccatatatcattaggaagtgatgatgaacagagc-----ggttacatggtttgaattgttgctcccatattgc 45146218  T
Q  138 tacgagcacatcccctcgtgatgggagggtgtgaataacgtagttgatctaatgctaaattgaacctatccgttagatcctggactgcgagcgtctgagc 237  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45146217 tacgagcacatcccctcgtgatgggagggtgtgactaacgtagttgatctaatgctaaattgaacctatccgttagatcttggactgcgagcgtctgagc 45146118  T
Q  238 attctaaaacaccaataaacgtctgatctattacgcgtgcatcgctctgat-gtatagtcaagactcttttcaaacgcaattagatcctctttgacc 333  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||  |||||||||||||||||||||||||||||||    
T  45146117 attctaaaacaccaataaacgtctgatctattacgcgtgcaccgctctgatcgtgtagtcaaga--cttttcaaacgcaattagatcctctttgacc 45146023  T

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