View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1580_low_22 (Length: 341)

Name: NF1580_low_22
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1580_low_22
NF1580_low_22
[»] chr4 (4 HSPs)
chr4 (221-324)||(47631146-47631249)
chr4 (14-49)||(47631254-47631289)
chr4 (253-306)||(18910374-18910427)
chr4 (258-306)||(54041964-54042012)
[»] chr5 (1 HSPs)
chr5 (257-306)||(28613394-28613443)
[»] chr3 (2 HSPs)
chr3 (255-303)||(2032380-2032428)
chr3 (255-303)||(55006974-55007022)
[»] chr6 (1 HSPs)
chr6 (223-305)||(30496411-30496494)
[»] chr7 (1 HSPs)
chr7 (240-306)||(33698535-33698601)
[»] scaffold0069 (1 HSPs)
scaffold0069 (258-303)||(4168-4213)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 221 - 324
Target Start/End: Complemental strand, 47631249 - 47631146
Alignment:
Q  221 tatcttttctttcccttcattctctctttcatttaaaccaaacaactaaacaattatcttatttttcattcactttctactcacttcattcctaccatta 320  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  47631249 tatcttttctttcccttcattctctctttcattcaaaccaaacaactaaataatcatcttacttttcattcactttctactcatttcattcctaccatta 47631150  T
Q  321 tctt 324  Q
    ||||    
T  47631149 tctt 47631146  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 47631289 - 47631254
Alignment:
Q  14 atatctaagtatttaatgaataacttcacaagcaat 49  Q
    ||||||||||||||||||||||||||||||||||||    
T  47631289 atatctaagtatttaatgaataacttcacaagcaat 47631254  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 18910427 - 18910374
Alignment:
Q  253 ttaaaccaaacaactaaacaattatcttatttttcattcactttctactcactt 306  Q
    |||||||||||||||||| ||| |||| |||||||| | |||||||||||||||    
T  18910427 ttaaaccaaacaactaaataatcatctcatttttcacttactttctactcactt 18910374  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 54042012 - 54041964
Alignment:
Q  258 ccaaacaactaaacaattatcttatttttcattcactttctactcactt 306  Q
    ||||||||||||||||| |||| | ||| |||||||||||||| |||||    
T  54042012 ccaaacaactaaacaatcatctcactttccattcactttctacccactt 54041964  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 28613394 - 28613443
Alignment:
Q  257 accaaacaactaaacaattatcttatttttcattcactttctactcactt 306  Q
    |||||||||||||| ||| |||||| ||||||||||||||||| ||||||    
T  28613394 accaaacaactaaaaaatcatcttacttttcattcactttctattcactt 28613443  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 2032380 - 2032428
Alignment:
Q  255 aaaccaaacaactaaacaattatcttatttttcattcactttctactca 303  Q
    |||||||||||||||| ||| |||| ||||| |||||||||||||||||    
T  2032380 aaaccaaacaactaaataatcatctcattttccattcactttctactca 2032428  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 55006974 - 55007022
Alignment:
Q  255 aaaccaaacaactaaacaattatcttatttttcattcactttctactca 303  Q
    |||||||||||||||| ||| |||| | ||| |||||||||||||||||    
T  55006974 aaaccaaacaactaaataatcatctcactttccattcactttctactca 55007022  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 30496494 - 30496411
Alignment:
Q  223 tcttttctttcccttcattctctctttcatttaaaccaaacaactaaa-caattatcttatttttcattcactttctactcact 305  Q
    ||||| ||||| ||| ||| || |||||||| | |||||||||||||| |||| |||| | ||| |||||||||||||||||||    
T  30496494 tctttcctttcactttattttcactttcattcataccaaacaactaaaacaatcatctcactttccattcactttctactcact 30496411  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 33698535 - 33698601
Alignment:
Q  240 ttctctctttcatttaaaccaaacaactaaacaattatcttatttttcattcactttctactcactt 306  Q
    ||||| |||||||||| ||||||||||||||  || |||| | ||| ||||||| ||||||||||||    
T  33698535 ttctcactttcatttataccaaacaactaaaatatcatctcactttccattcacattctactcactt 33698601  T

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Target: scaffold0069 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 4213 - 4168
Alignment:
Q  258 ccaaacaactaaacaattatcttatttttcattcactttctactca 303  Q
    ||||| ||||||||||| |||| ||||| |||||||||||||||||    
T  4213 ccaaataactaaacaatcatctcattttccattcactttctactca 4168  T

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