View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1580_low_24 (Length: 335)

Name: NF1580_low_24
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1580_low_24
NF1580_low_24
[»] chr2 (16 HSPs)
chr2 (17-326)||(30252429-30252738)
chr2 (33-276)||(30172371-30172614)
chr2 (24-268)||(30279902-30280146)
chr2 (24-268)||(30148061-30148305)
chr2 (26-224)||(30023435-30023633)
chr2 (26-224)||(30037064-30037262)
chr2 (24-214)||(30068557-30068747)
chr2 (26-224)||(30118489-30118687)
chr2 (164-318)||(30183529-30183683)
chr2 (26-224)||(30231202-30231400)
chr2 (26-214)||(30081841-30082029)
chr2 (26-202)||(30106574-30106750)
chr2 (26-197)||(30133216-30133387)
chr2 (24-210)||(30790627-30790813)
chr2 (128-194)||(30030543-30030609)
chr2 (128-194)||(30224681-30224747)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 30252429 - 30252738
Alignment:
Q  17 caacgcaaggaaattgtgggatgacaaccttcccggtcattcttgtattcgaaacatcaagagtttgacaattgacaaatgtggtggcattgattacgca 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||    
T  30252429 caactcaaggaaattgtgggatgacaaccttcccggtcattcttgtattcgaaacatcaagagtttgacaattgacaaatgtggtggcattgcgtgtgca 30252528  T
Q  117 ttctcaccctcagtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcatatttatctctgatggaaagttgg 216  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30252529 ttctcatcctcagtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcatatttatctctgatggaaagttgg 30252628  T
Q  217 gaagtctttcttcatctcagatatcattctctgatgatgaggtgagcactatttccaactttataactactaactatggattgattttcttttagttctg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30252629 gaagtctttcttcatctcagatatcattctctgatgatgaggtgagcactgtttccaactttataactgctaactatggattgattttcttttagttctg 30252728  T
Q  317 ctacctatgc 326  Q
    ||||||||||    
T  30252729 ctacctatgc 30252738  T

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Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 33 - 276
Target Start/End: Original strand, 30172371 - 30172614
Alignment:
Q  33 tgggatgacaaccttcccggtcattcttgtattcgaaacatcaagagtttgacaattgacaaatgtggtggcattgattacgcattctcaccctcagtgg 132  Q
    ||||||||||||||||| ||||||| ||| |||| |||||| |  |||||||||||||||||||||| |||||| |  |||||||||||| |||||||||    
T  30172371 tgggatgacaaccttccaggtcatttttgcattcaaaacatgagaagtttgacaattgacaaatgtgatggcatagcgtacgcattctcatcctcagtgg 30172470  T
Q  133 ctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcatatttatctctgatggaaagttgggaagtctttcttcatc 232  Q
    ||| ||||||||||||| || ||||||| ||| |||||||||||||||||||||||| ||| ||| |||| |||||||||||||| | |||| |||||||    
T  30172471 ctagagaacttgtaaacctgaagtatcttgagtttagtaattgccaaatgttggaggacatctttgtctcagatggaaagttgggtaatcttccttcatc 30172570  T
Q  233 tcagatatcattctctgatgatgaggtgagcactatttccaact 276  Q
    ||||| |  ||||||||||||||||||||||||| | |||||||    
T  30172571 tcagaaacaattctctgatgatgaggtgagcactgtctccaact 30172614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 30279902 - 30280146
Alignment:
Q  24 aggaaattgtgggatgacaaccttcccggtcattcttgtattcgaaacatcaagagtttgacaattgacaaatgtggtggcattgattacgcattctcac 123  Q
    |||| |||||||||||||||| |||| ||||||||||| |||| |||| | | ||||||||| ||||||||||||||| |||| | |||| |||| ||      
T  30279902 aggagattgtgggatgacaactttccaggtcattcttgcattcaaaacttgaggagtttgacgattgacaaatgtggtagcatagcttacacattttcgt 30280001  T
Q  124 cctcagtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcatatttatctctgatggaaagttgggaagtct 223  Q
    |||||||||||| ||||||||||||| || | ||||| |  |||| ||||||||  |||||||| |  |||||| |||| |||||||| ||||| ||| |    
T  30280002 cctcagtggctagagaacttgtaaacctgcaatatcttggcattaataattgcctgatgttggaagagatatttgtctccgatggaaatttgggcagtgt 30280101  T
Q  224 ttcttcatctcagatatcattctctgatgatgaggtgagcactat 268  Q
      ||||| |||||| | |||| |||||||||||||||||||||||    
T  30280102 aacttcaactcagaaaccattttctgatgatgaggtgagcactat 30280146  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 30148061 - 30148305
Alignment:
Q  24 aggaaattgtgggatgacaaccttcccggtcattcttgtattcgaaacatcaagagtttgacaattgacaaatgtggtggcattgattacgcattctcac 123  Q
    |||| ||||| |||| ||||| |||| ||||||||||| |||| |||| | | ||||||||| ||||||||||||||| |||| | |||| |||| ||      
T  30148061 aggagattgtaggataacaactttccaggtcattcttgcattcaaaacttgaggagtttgacgattgacaaatgtggtagcatagcttacacattttcgt 30148160  T
Q  124 cctcagtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcatatttatctctgatggaaagttgggaagtct 223  Q
    ||||||| |||| ||||||||||||| || | ||||| |  |||| ||||||||  |||||||| |  |||||| |||| |||||||| ||||| | |||    
T  30148161 cctcagttgctagagaacttgtaaacctgcaatatcttggcattaataattgcctgatgttggaagagatatttgtctccgatggaaatttgggcaatct 30148260  T
Q  224 ttcttcatctcagatatcattctctgatgatgaggtgagcactat 268  Q
      ||||| |||||| | |||| |||||||||||||||||||||||    
T  30148261 aacttcaactcagaaaccattttctgatgatgaggtgagcactat 30148305  T

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Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 30023435 - 30023633
Alignment:
Q  26 gaaattgtgggatgacaaccttcccggtcattcttgtattcgaaacatcaagagtttgacaattgacaaatgtggtggcattgattacgcattctcaccc 125  Q
    |||| ||||||||||||| ||||   |||||||| | || | |||| | |||||||||||||| |||||||||||| ||||    |||||||||||| ||    
T  30023435 gaaactgtgggatgacaaacttctgagtcattctcgcatgcaaaacttgaagagtttgacaatggacaaatgtggtagcatgagatacgcattctcatcc 30023534  T
Q  126 tcagtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcatatttatctctgatggaaagttgggaagtctt 224  Q
    ||||| |||| ||||||||||||| || | | |||  ||||||||||||||||||||||||||| ||||||| |||| |||||| |||| || ||||||    
T  30023535 tcagttgctagagaacttgtaaacctgaaatctcttaagattagtaattgccaaatgttggaggacatatttgtctcagatggagagttcggcagtctt 30023633  T

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Target: chr2; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 30037262 - 30037064
Alignment:
Q  26 gaaattgtgggatgacaaccttcccggtcattcttgtattcgaaacatcaagagtttgacaattgacaaatgtggtggcattgattacgcattctcaccc 125  Q
    |||| ||||||||||||| ||||   |||||||| | || | |||| | |||||||||||||| |||||||||||| ||||    |||||||||||| ||    
T  30037262 gaaactgtgggatgacaaacttctgagtcattctcgcatgcaaaacttgaagagtttgacaatggacaaatgtggtagcatgagatacgcattctcatcc 30037163  T
Q  126 tcagtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcatatttatctctgatggaaagttgggaagtctt 224  Q
    ||||| |||| ||||||||||||| || | | |||  ||||||||||||||||||||||||||| ||||||| |||| |||||| |||| || ||||||    
T  30037162 tcagttgctagagaacttgtaaacctgaaatctcttaagattagtaattgccaaatgttggaggacatatttgtctcagatggagagttcggcagtctt 30037064  T

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Target: chr2; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 30068557 - 30068747
Alignment:
Q  24 aggaaattgtgggatgacaaccttcccggtcattcttgtattcgaaacatcaagagtttgacaattgacaaatgtggtggcattgattacgcattctcac 123  Q
    |||||| ||||||||||||| ||| | || |||||||| |||| |||| | | ||||||||||||||||||||||||| |||| |  || |||||||||     
T  30068557 aggaaactgtgggatgacaaactttcggggcattcttgcattcaaaacttgaggagtttgacaattgacaaatgtggtagcatagcctatgcattctcat 30068656  T
Q  124 cctcagtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcatatttatctctgatggaaagtt 214  Q
    ||||| |||||  ||| ||||||||| || || |||| |||||||||||||||||||||||||||   ||| || |||| |||||||||||    
T  30068657 cctcaatggctggagagcttgtaaacctgcagcatcttgagattagtaattgccaaatgttggagcagataattgtctcagatggaaagtt 30068747  T

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Target: chr2; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 30118687 - 30118489
Alignment:
Q  26 gaaattgtgggatgacaaccttcccggtcattcttgtattcgaaacatcaagagtttgacaattgacaaatgtggtggcattgattacgcattctcaccc 125  Q
    |||| ||||||||||||| ||||   |||||||| | || | |||| | |||||||||||||| |||||||||||| ||||    |||||||||||| ||    
T  30118687 gaaactgtgggatgacaaacttctgagtcattctcgcatgcaaaacttgaagagtttgacaatggacaaatgtggtagcatgagatacgcattctcatcc 30118588  T
Q  126 tcagtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcatatttatctctgatggaaagttgggaagtctt 224  Q
    ||||| |||| ||||||||||||| || | | |||  ||||||||||||||||||||||||||| ||||||| |||| |||||| |||| || ||||||    
T  30118587 tcagttgctagagaacttgtaaacctgaaatctcttaagattagtaattgccaaatgttggaggacatatttgtctcagatggagagttcggcagtctt 30118489  T

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Target: chr2; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 164 - 318
Target Start/End: Complemental strand, 30183683 - 30183529
Alignment:
Q  164 gattagtaattgccaaatgttggagggcatatttatctctgatggaaagttgggaagtctttcttcatctcagatatcattctctgatgatgaggtgagc 263  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||| |||  ||||||| | |||||||| |||||||||||| |    
T  30183683 gattagtaattgccaaatgttggagggcatatttgtccctgatggaaagttgggtagtcttcctttgtctcagaaaccattctctaatgatgaggtgaac 30183584  T
Q  264 actatttccaactttataactactaactatggattgattttcttttagttctgct 318  Q
    ||| ||||||||| | ||| || ||||||| |  ||||||| | ||| |||||||    
T  30183583 actgtttccaactctgtaaatattaactattgtatgattttatcttacttctgct 30183529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 224
Target Start/End: Complemental strand, 30231400 - 30231202
Alignment:
Q  26 gaaattgtgggatgacaaccttcccggtcattcttgtattcgaaacatcaagagtttgacaattgacaaatgtggtggcattgattacgcattctcaccc 125  Q
    |||| ||||||||||||| ||||   |||||||| | || | |||| | |||||||||||||| |||||||||||| ||||    |||||||||||| ||    
T  30231400 gaaactgtgggatgacaaacttctgagtcattctcgcatgcaaaacttgaagagtttgacaatggacaaatgtggtagcatgagatacgcattctcatcc 30231301  T
Q  126 tcagtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcatatttatctctgatggaaagttgggaagtctt 224  Q
    ||||| |||| ||||||||||||| || | | |||  ||||||||||||||||||||||||||| ||||||| |||| |||||| |||| || ||||||    
T  30231300 tcagttgctagagaacttgtaaacctgaaatctcttaagattagtaattgccaaatgttggaggacatatttgtctcagatggagagttcggcagtctt 30231202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 214
Target Start/End: Original strand, 30081841 - 30082029
Alignment:
Q  26 gaaattgtgggatgacaaccttcccggtcattcttgtattcgaaacatcaagagtttgacaattgacaaatgtggtggcattgattacgcattctcaccc 125  Q
    |||| ||||||||||||| ||||   |||||||| | || | |||| | |||||||||||||| |||||||||||| ||||    |||||||||||| ||    
T  30081841 gaaactgtgggatgacaaacttctgagtcattctcgcatgcaaaacttgaagagtttgacaatggacaaatgtggtagcatgagatacgcattctcatcc 30081940  T
Q  126 tcagtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcatatttatctctgatggaaagtt 214  Q
    ||||| |||| ||||||||||||| || | | |||  |||||||||||||||||||||||||||  |||||| |||| |||||| ||||    
T  30081941 tcagttgctagagaacttgtaaacctgaaatctcttaagattagtaattgccaaatgttggaggaaatatttgtctcagatggagagtt 30082029  T

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Target: chr2; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 30106750 - 30106574
Alignment:
Q  26 gaaattgtgggatgacaaccttcccggtcattcttgtattcgaaacatcaagagtttgacaattgacaaatgtggtggcattgattacgcattctcaccc 125  Q
    |||| ||||||||||||| ||||   |||||||| | || | |||| | |||||||||||||| |||||||||||| ||||    |||||||||||| ||    
T  30106750 gaaactgtgggatgacaaacttcgtagtcattctcgcatgcaaaacttgaagagtttgacaatagacaaatgtggtagcatgagatacgcattctcatcc 30106651  T
Q  126 tcagtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcatatttatctc 202  Q
    ||||| |||| ||||||||||||| || | | |||  ||||||||||||||||||||||||||| ||||||| ||||    
T  30106650 tcagttgctagagaacttgtaaacctgaaatctcttaagattagtaattgccaaatgttggaggacatatttgtctc 30106574  T

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Target: chr2; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 30133387 - 30133216
Alignment:
Q  26 gaaattgtgggatgacaaccttcccggtcattcttgtattcgaaacatcaagagtttgacaattgacaaatgtggtggcattgattacgcattctcaccc 125  Q
    |||| ||||||||||||| ||||   |||||||| | || | |||| | |||||||||| |||||||||||||||| ||||    |||||||||||| ||    
T  30133387 gaaactgtgggatgacaaacttctgagtcattctcgcatgcaaaacttgaagagtttgaaaattgacaaatgtggtagcatgagatacgcattctcatcc 30133288  T
Q  126 tcagtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcatattt 197  Q
    ||||| |||| ||||||||||||| || | | |||  |||||||||||| |||| ||||||||| |||||||    
T  30133287 tcagttgctagagaacttgtaaacctgaaatctcttaagattagtaatttccaattgttggaggacatattt 30133216  T

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Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 30790627 - 30790813
Alignment:
Q  24 aggaaattgtgggatgacaaccttcccggtcattcttgtattcgaaacatcaagagtttgacaattgacaaatgtggtggcattgattacgcattctcac 123  Q
    |||||| ||||||||||||| ||||| ||||||||||| || | |||| | |||||||||||| |||||| |||| ||  |||    ||||||||||||     
T  30790627 aggaaactgtgggatgacaaacttccaggtcattcttgcatgcaaaacttgaagagtttgacacttgacagatgttgtaacatatcgtacgcattctcat 30790726  T
Q  124 cctcagtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcatatttatctctgatggaa 210  Q
    |||||||||||   ||  | ||||| ||| || |||| | ||||||||||||||||||||||||||  |||||| |||| |||||||    
T  30790727 cctcagtggctggcgagttggtaaatttgaagcatcttgcgattagtaattgccaaatgttggaggagatatttgtctcagatggaa 30790813  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 30030543 - 30030609
Alignment:
Q  128 agtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcata 194  Q
    |||||||| ||||||||||| | || | ||||| ||||||||||| |||||||||||||||| ||||    
T  30030543 agtggctagagaacttgtaaccctgcaatatcttgagattagtaactgccaaatgttggaggacata 30030609  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 30224681 - 30224747
Alignment:
Q  128 agtggctaaagaacttgtaaacttggagtatctcgagattagtaattgccaaatgttggagggcata 194  Q
    |||||||| ||||||||||| | || | ||||| ||||||||||| |||||||||||||||| ||||    
T  30224681 agtggctagagaacttgtaaccctgcaatatcttgagattagtaactgccaaatgttggaggacata 30224747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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