View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_26 (Length: 333)
Name: NF1580_low_26
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 9818475 - 9818161
Alignment:
| Q |
7 |
tgtgcattctttgctactttagatttcatatctgtagtgcttgtattgttttcctagatgattcgacttagtgatcataccgctacatgttatggcgttt |
106 |
Q |
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| T |
9818475 |
tgtgcgttctttgctactttagatttcatatctgtagtgcttgtattgttttcctagataattcgacttagtgatcataccgctacatgttatggcgttt |
9818376 |
T |
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| Q |
107 |
tgggggtcggacactacgctgtctactaccgactttaattttgacgaatatgaggctcaaatttgtcatgtttgatgatgaataagaaacagaagtatgc |
206 |
Q |
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| T |
9818375 |
tgggggtcggacactatgctgtctactaccgactttaattttgatgaatatgaggctcaaatttgtcatgtttgatgatgaataagaaacagaagtatgc |
9818276 |
T |
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| Q |
207 |
acaacaatgtcgcacttggcataatgtatg-----nnnnnnnnnnnnnnntactgaagctaacaaatcaaaacttcaggttcattttagttttgaacaca |
301 |
Q |
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| T |
9818275 |
acaacaatgtcgcacttggcataatgtatgaaaaataaaaaataaaaaaatactgaagctaacaaatcaaaacttcaggttcattttagttttgaacaca |
9818176 |
T |
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| Q |
302 |
tcaaaatccaaactt |
316 |
Q |
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||||||||||||||| |
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| T |
9818175 |
tcaaaatccaaactt |
9818161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 9824195 - 9824114
Alignment:
| Q |
7 |
tgtgcattctttgctactttagatttcatatctgtagtgcttgtattgttttcctagatgattcgacttagtgatcataccg |
88 |
Q |
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||||||||||||| | ||||| || ||||| |||||||||||||||||||||||| | ||| ||| |||||| ||||||| |
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| T |
9824195 |
tgtgcattctttgatgttttagtttccatatgtgtagtgcttgtattgttttcctatagaatttgacgtagtgaccataccg |
9824114 |
T |
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