View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_28 (Length: 311)
Name: NF1580_low_28
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 5 - 295
Target Start/End: Complemental strand, 45155438 - 45155148
Alignment:
| Q |
5 |
accggaagtagaaaatgggtttaaagagttggaaaattcaatcaaatgagtcactaccttaggagaaggtatttgattagttgtaacacattgaagaatg |
104 |
Q |
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| T |
45155438 |
accggaagtagaaaatgggtttaaagagttggaaaattcaatcaaatgagccactaccttaggagaaggtatttgattagttgtaacacattgaagaatg |
45155339 |
T |
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| Q |
105 |
gtattaagtgatctatattttacacgcacaccatcaatgtcttttaacaaatgactacaaagtatagatgcattagaagtgtaggcaaagtagtctaata |
204 |
Q |
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| T |
45155338 |
gtattaagtgatctatattttacacgcacaccatcaatgtcttttaacaaatgactacaaagtacagatgcattagaagtgtaggcaaagtagtctaata |
45155239 |
T |
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| Q |
205 |
gaagagattgaatttcgggttgaagtttggtttgggtcaggatctgagtaaccgtgggttgatctggatccaagagatgctctgcaaataa |
295 |
Q |
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| T |
45155238 |
gaagagattgaatttcgggttgaagtttggtttgggttaggatctgagtaaccgtgggttgatctggatccaagagatgctctgcaaataa |
45155148 |
T |
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