View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1580_low_29 (Length: 310)
Name: NF1580_low_29
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 11821180 - 11820905
Alignment:
| Q |
20 |
acagttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccagcttgaacgtaagcaa |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11821180 |
acagttggacacacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccaccttgaacgtaagcaa |
11821081 |
T |
|
| Q |
120 |
cttcgttctttatatcaacattgattgttctaagattaaacatatcaagtatgataaagggtgattgatttacataagaaataccctcataatcatgtcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11821080 |
cttcgttctttatatcaacattgattgttctaagattaaacatatcaagtatgataaagggtgattgatttacataagaaataccctcataatcatgtcc |
11820981 |
T |
|
| Q |
220 |
accacttctgattttaatttgaatattgacttgcttggcacatataacagtggattgaacatgtgagggttgtttt |
295 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11820980 |
accacttctgattttgatttgaatattgacttgcttggcacatataacagtggattgaacatgtgagggttgtttt |
11820905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 11835184 - 11835459
Alignment:
| Q |
20 |
acagttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccagcttgaacgtaagcaa |
119 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| |||||||| ||| ||||||| || ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11835184 |
acagttggacacacaccagcaggaaatccatgaactttactcttttcagaaattctgtagtaaacttcaccaagtgtagcaccagcttgaatataagcaa |
11835283 |
T |
|
| Q |
120 |
cttcgttctttatatcaacattgattgttctaagattaaacatatcaagtatgataaagggtgattgatttacataagaaataccctcataatcatgtcc |
219 |
Q |
| |
|
|||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | | || ||||||||||| ||||||||||| |
|
|
| T |
11835284 |
cttcattttttatatcaacattgattgttcttagattaaacatatcaagtatgataaagggttggttagagatgtatgaaataccctcgtaatcatgtcc |
11835383 |
T |
|
| Q |
220 |
accacttctgattttaatttgaatattgacttgcttggcacatataacagtggattgaacatgtgagggttgtttt |
295 |
Q |
| |
|
||| ||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
11835384 |
accgcttcttattttgatttgaatgttgacttgcttagcacatattacagtggattggacatgcgaaggttgtttt |
11835459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 11787211 - 11787292
Alignment:
| Q |
29 |
caaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccagcttgaa |
110 |
Q |
| |
|
|||| ||||||||| ||||||||||| | ||| ||||||| ||||||||||||||||| || | |||||||| ||||||| |
|
|
| T |
11787211 |
caaagaccagcagggaaaccatgaacatcacttttctcatgtattctataataaacttcgccgatagtagcaccggcttgaa |
11787292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 11933538 - 11933488
Alignment:
| Q |
190 |
tacataagaaataccctcataatcatgtccaccacttctgattttaatttg |
240 |
Q |
| |
|
|||||| |||| ||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
11933538 |
tacataggaaacaccctcatagtcatgtccaccacttctaattttcatttg |
11933488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 11946759 - 11946709
Alignment:
| Q |
190 |
tacataagaaataccctcataatcatgtccaccacttctgattttaatttg |
240 |
Q |
| |
|
|||||| |||| ||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
11946759 |
tacataggaaacaccctcatagtcatgtccaccacttctaattttcatttg |
11946709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 11933702 - 11933638
Alignment:
| Q |
26 |
ggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcacc |
90 |
Q |
| |
|
|||||||| || || |||||||||||||| ||||| || |||| ||||||||| |||| |||||| |
|
|
| T |
11933702 |
ggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcacc |
11933638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 11946923 - 11946859
Alignment:
| Q |
26 |
ggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcacc |
90 |
Q |
| |
|
|||||||| || || |||||||||||||| ||||| || |||| ||||||||| |||| |||||| |
|
|
| T |
11946923 |
ggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcacc |
11946859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 38090661 - 38090579
Alignment:
| Q |
20 |
acagttggacaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcacc |
102 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||| |||| ||||| |||| ||||||||||||||||||| ||||||||| |
|
|
| T |
38090661 |
acagtaggacaaaccccagctggaaaaccatgaacactactaatctcagaaatcctataataaacttcaccaattgtagcacc |
38090579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 38125487 - 38125411
Alignment:
| Q |
28 |
acaaacaccagcaggaaaaccatgaaccttactcttctcataaattctataataaacttcaccaagtgtagcaccag |
104 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||||||||| | || ||||||||||| ||||||||| ||||||||| |
|
|
| T |
38125487 |
acaaaccccagcaggaaagccatgaactttactcttctcccatatcctataataaacctcaccaagtatagcaccag |
38125411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University