View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1580_low_36 (Length: 249)
Name: NF1580_low_36
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_36 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0911 (1 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 41068241 - 41068007
Alignment:
| Q |
15 |
tataccgtggatgttccaataaaggaaattcattgagaagggggagttgaaccctttgcacgggtgttgtacgaagctttccctaaaacttgctttttca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41068241 |
tataccgtggatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacttgctttttca |
41068142 |
T |
|
| Q |
115 |
atgtttgctgctgttttttagacaaaacttgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcgagcctataaatccaagtaattttg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| |
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| T |
41068141 |
atgtttgctgctgttttttagacaaaacttgcgtgaatccttcggctgccatacgttgatcttactcccgaatgcgagcccataaatccaagtcattttg |
41068042 |
T |
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| Q |
215 |
aacatttttcgaaacctggatttccttggactgaa |
249 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
41068041 |
aacatttttcgaaacctggatttccttggactgaa |
41068007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 39 - 249
Target Start/End: Complemental strand, 8479851 - 8479641
Alignment:
| Q |
39 |
gaaattcattgagaagggggagttgaaccctttgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgctgctgttttttagaca |
138 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8479851 |
gaaattcattgagaagggggagttgaacccttcacacgggtgttgtacgaagttttccctaaaacttgctttttcaatgtttgctgctgttttttagaca |
8479752 |
T |
|
| Q |
139 |
aaacttgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcgagcctataaatccaagtaattttgaacatttttcgaaacctggatttc |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8479751 |
aaacttgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcgagcctataaatccaagtcattttgaacatttttcgaaacctggatttc |
8479652 |
T |
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| Q |
239 |
cttggactgaa |
249 |
Q |
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||||||||||| |
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| T |
8479651 |
cttggactgaa |
8479641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 240
Target Start/End: Complemental strand, 10996984 - 10996810
Alignment:
| Q |
65 |
accctttgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgctgctgttttttagacaaaacttgcgtgaatccttcggctgcc |
164 |
Q |
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|||||||||||||||||| ||||| ||||| ||||| |||| |||||||| || ||||||||||| || || | ||||||||| || ||||| | ||| |
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| T |
10996984 |
accctttgcacgggtgttatacgaggcttttcctaacactttctttttcactgcctgctgctgtttcttggatagaacttgcgtaaaatcttcgtccgcc |
10996885 |
T |
|
| Q |
165 |
atacgttgatcatactcccgaatgcgagcctataaatccaagtaattttgaacatttttcgaaacctggatttcct |
240 |
Q |
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|| | ||||||||| || ||||| || || || ||||||||| |||| | ||||||||||||||| ||||||| |
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| T |
10996884 |
atccattgatcatattcacgaattcggacccat-aatccaagtccctttggaaatttttcgaaacctgaatttcct |
10996810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 10032957 - 10033191
Alignment:
| Q |
15 |
tataccgtggatgttccaataaaggaaattcattgagaagggggagttgaaccctttgcacgggtgttgtacgaagctttccctaaaacttgctttttca |
114 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10032957 |
tataccgcggatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacatgctttttca |
10033056 |
T |
|
| Q |
115 |
atgtttgctgctgttttttagacaaaacttgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcgagcctataaatccaagtaattttg |
214 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |
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| T |
10033057 |
atgtttgctgctgttttttagataaaacttgcgtgaatccttcgcttgccatacgttgatcatactcccgaatgtgagcccataaatccaagtcattttg |
10033156 |
T |
|
| Q |
215 |
aacatttttcgaaacctggatttccttggactgaa |
249 |
Q |
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||||||||| |||||||||||||| ||||||||| |
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| T |
10033157 |
cacatttttcaaaacctggatttccctggactgaa |
10033191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 43022014 - 43022143
Alignment:
| Q |
28 |
ttccaataaaggaaattcattgagaagggggagttgaaccctttgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgctgctg |
127 |
Q |
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|||||||| || | |||||||| ||| | || ||| |||||||||||||||||| |||||||| || ||||| |||||| |||||| || ||||| || |
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| T |
43022014 |
ttccaatagagtagattcattgtgaatgaggttttgtaccctttgcacgggtgttatacgaagcgtttcctaacacttgccttttcactgcctgctgttg |
43022113 |
T |
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| Q |
128 |
ttttttagacaaaacttgcgtgaatccttc |
157 |
Q |
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|| || ||||| |||||||| || ||||| |
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| T |
43022114 |
cttcttggacaatacttgcgtaaaaccttc |
43022143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 39 - 249
Target Start/End: Original strand, 19936349 - 19936559
Alignment:
| Q |
39 |
gaaattcattgagaagggggagttgaaccctttgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgctgctgttttttagaca |
138 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19936349 |
gaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgctgctgttttttagaca |
19936448 |
T |
|
| Q |
139 |
aaacttgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcgagcctataaatccaagtaattttgaacatttttcgaaacctggatttc |
238 |
Q |
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|||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19936449 |
aaacctgcgtgaatccttcggcggccatacattgatcatactcccgaatgcgagcccataaatccaagtcattttgaacatttttcgaaacctggatttc |
19936548 |
T |
|
| Q |
239 |
cttggactgaa |
249 |
Q |
| |
|
|||||| |||| |
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| T |
19936549 |
cttggattgaa |
19936559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0911 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0911
Description:
Target: scaffold0911; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 223
Target Start/End: Original strand, 2738 - 2934
Alignment:
| Q |
24 |
gatgttccaataaaggaaattcattgagaagggggagttgaaccctttgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgct |
123 |
Q |
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||||||||||||||||| | |||||||| ||| ||||| ||||||||||||||| || ||||||||||| || | ||||||||||||||||||||| | |
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| T |
2738 |
gatgttccaataaaggacactcattgaggaggaggagt---accctttgcacgggttttatacgaagctttacccagaacttgctttttcaatgtttgtt |
2834 |
T |
|
| Q |
124 |
gctgttttttagacaaaacttgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcgagcctataaatccaagtaattttgaacattttt |
223 |
Q |
| |
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|||| || || || || ||||||||||| ||||| | |||||| |||||||||||||| |||||||||||| |||||||||||| |||||| |||||||| |
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| T |
2835 |
gctgcttcttggataacacttgcgtgaagccttctgttgccatccgttgatcatactcgcgaatgcgagcccataaatccaagtcattttgtacattttt |
2934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 360 - 224
Alignment:
| Q |
15 |
tataccgtggatgttccaataaaggaaattcattgagaagggggagttgaaccctttgcacgggtgttgtacgaagctttccctaaaacttgctttttca |
114 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||| | ||| |||||||||||||||||| ||||||||||| || | |||||||||||||| |
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| T |
360 |
tataccttggatgttccaataaaggacattcattgagaatgatgaggattaccctttgcacgggtgttatacgaagctttacccataacttgctttttca |
261 |
T |
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| Q |
115 |
atgtttgctgctgttttttagacaaaacttgcgtgaa |
151 |
Q |
| |
|
||||||| ||||| || || || || ||||||||||| |
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| T |
260 |
atgtttgttgctgcttcttggataacacttgcgtgaa |
224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 229
Target Start/End: Complemental strand, 26657379 - 26657175
Alignment:
| Q |
28 |
ttccaataaaggaaattcat--tga-gaagggggagttgaaccctttgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgctg |
124 |
Q |
| |
|
|||||||||||||||||||| ||| |||| |||| | ||||||||| ||||||||||||| ||| || ||||| |||||| |||| | || ||| || |
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| T |
26657379 |
ttccaataaaggaaattcatgatgaagaagatggaggagtaccctttgcccgggtgttgtacggagcctttcctaacacttgccttttaactgcttgttg |
26657280 |
T |
|
| Q |
125 |
ctgttttttagacaaaacttgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcgagcctataaatccaagtaattttgaacatttttc |
224 |
Q |
| |
|
||| ||||| || |||||||| ||||| ||||| | ||||| ||||||||||| || ||||| || |||||||||||||| | ||| || ||||| ||| |
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| T |
26657279 |
ctgctttttggataaaacttgtgtgaagccttcatccgccatccgttgatcatattcacgaatacgtgcctataaatccaaatcattctggacattcttc |
26657180 |
T |
|
| Q |
225 |
gaaac |
229 |
Q |
| |
|
||||| |
|
|
| T |
26657179 |
gaaac |
26657175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 1633117 - 1632938
Alignment:
| Q |
28 |
ttccaataaaggaaattcattgagaagggggagttgaaccctttgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgctgctg |
127 |
Q |
| |
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|||||||| || | |||||||| ||||| || || |||||||||| ||||||| |||||||| || ||||| ||||||||||||| || |||| || |
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| T |
1633117 |
ttccaatagagtagattcattgtgaaggaggttttttaccctttgcatgggtgttatacgaagcgtttcctaacacttgctttttcactgcccgctgttg |
1633018 |
T |
|
| Q |
128 |
ttttttagacaaaacttgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcgagcctataaatccaagt |
207 |
Q |
| |
|
|| || ||||| |||||||| || | ||| | ||| | ||||| ||||| || | ||| |||||| |||||||||||| |
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|
| T |
1633017 |
cttcttggacaatacttgcgtaaaactttcatccgccgtccgttggtcatattcacaaatacgagcccataaatccaagt |
1632938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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