View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_4 (Length: 539)
Name: NF1580_low_4
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 21 - 529
Target Start/End: Complemental strand, 40765705 - 40765197
Alignment:
| Q |
21 |
caatgtaccattcatatggctcaacaggcaaatccatctcctttagtctgtaacattataacaatagaaacaaggaaaataaagtnnnnnnntccttaac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40765705 |
caatgtaccattcatatggctcaacaggcaaatccatctcctttagtctgtaacattataacaatagaaacaaggaaaataaag-caaagaatccttaac |
40765607 |
T |
|
| Q |
121 |
gagagcacatttatttatgaatcaggataagcagaaattataatttacctttgttgaatgacatcataacgctcctccctttggcctccaccaagtaact |
220 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40765606 |
aagagcacatttatttatgaatcaggataagcggaaattataatttacctttgttgaatgacatcataacgctcctccctttggcctccaccaattaact |
40765507 |
T |
|
| Q |
221 |
ctcccacctgaaattacagttacaaattccaattacgccaaa-acaaaagcaactaggtataacatatacaactcatctgtacccccgctcagtatcata |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40765506 |
ctcccacctgaaattacagttacaaattccaattacgccaaccacaaaagcaactaggtataacatatacaactcatctgtacccccgctcagtatcata |
40765407 |
T |
|
| Q |
320 |
ataagtaaatcacatttctcgatctctctttatttctaattctcgtctacactgcttactatgatgataagacttctatagttcttttcccaagcaccat |
419 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40765406 |
atgagtaaatcacatttctcgatctctctttatttctaattctcgtctacactgcttactatgatgataggacttctatagttcttttcccaagcaccat |
40765307 |
T |
|
| Q |
420 |
agacatgttaaaataaaacaaacagaatacatacatttgggacaagaacatccatagcagccactgtctttaagtcatcattgaggcgcatgtagaatgc |
519 |
Q |
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| T |
40765306 |
agacatgttaaaataaaacaaacagaatacatacatttgggacaagaacatccatagcagccactgtctttaagtcatcattgaggcgcatgtagaatgc |
40765207 |
T |
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| Q |
520 |
tttgcctttg |
529 |
Q |
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|||||||||| |
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| T |
40765206 |
tttgcctttg |
40765197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 334 - 523
Target Start/End: Complemental strand, 42912939 - 42912750
Alignment:
| Q |
334 |
tttctcgatctctctttatttctaattctcgtctacactgcttactatgatgataagacttctatagttcttttcccaagcaccatagacatgttaaaat |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42912939 |
tttctcgatctctctttatttctaattctcgtctacactgcttactacgatggtaggacttctgtagttcttttcccaagcaccatagacatgttaaaat |
42912840 |
T |
|
| Q |
434 |
aaaacaaacagaatacatacatttgggacaagaacatccatagcagccactgtctttaagtcatcattgaggcgcatgtagaatgctttg |
523 |
Q |
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|||| | |||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42912839 |
aaaatatacaggatacatacctttgggacaagaacatccatagcagccactgtctctaagtcatcattgaggcgcatgtagaatgctttg |
42912750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 122 - 280
Target Start/End: Complemental strand, 42914256 - 42914097
Alignment:
| Q |
122 |
agagcacatttatttatgaatcaggataagcagaaattataatttacctttgttgaatgacatcataacgctcctccctttggcctccaccaagtaactc |
221 |
Q |
| |
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|||||| ||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
42914256 |
agagcaaatttatttaagaattagggtaagcggaaattataatttacctttgttgaatgacatcataacgctcctccctttggcttccaccaattaactc |
42914157 |
T |
|
| Q |
222 |
tcccacctgaaattacagttacaaattccaattacgccaa-aacaaaagcaactaggtat |
280 |
Q |
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||| ||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |
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| T |
42914156 |
tccaacctgaaattacagttacactttcctattacgccaaccacaaaagcaactaggtat |
42914097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 42914383 - 42914323
Alignment:
| Q |
21 |
caatgtaccattcatatggctcaacaggcaaatccatctcctttagtctgtaacattataa |
81 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
42914383 |
caatgtaccattcatatggctcaacaggcagatccatctcctctagtctgtaacattataa |
42914323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 42913047 - 42912991
Alignment:
| Q |
280 |
taacatatacaactcatctgtacccccgctcagtatcataataagtaaatcacattt |
336 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||| ||||||||| ||||| |
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| T |
42913047 |
taacatatataactcatatgtacccccgctcagtatcataacaagtaaatcgcattt |
42912991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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