View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_41 (Length: 241)
Name: NF1580_low_41
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 7287790 - 7287568
Alignment:
| Q |
6 |
cttaattgtatatattaagcacaataagttttgtgacaaataccacaaatgccggtagtagacacaaaacgtattgaaacaattcatgttttgggaacaa |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7287790 |
cttaattgtatatattaagcacaataagttttgtgacaaataccacaaatgccagcagtacacacaaaacgtattgaaacaattcatgttttgggaacaa |
7287691 |
T |
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| Q |
106 |
cagacttcctctgcagcaaaagtgagaatctaatgaaaacata--annnnnnnnnagagttaacaacttaataacttctgatataaattagttaaagcat |
203 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7287690 |
cagacttcctctgcagctaaagtgagaatctaatgaaaacatattttttttttttagagttaacaacttaataacttctgatataaattagttaaagcat |
7287591 |
T |
|
| Q |
204 |
aaatattctaatatattactaac |
226 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
7287590 |
aaatattctaatatattattaac |
7287568 |
T |
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