View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_43 (Length: 237)
Name: NF1580_low_43
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 40517713 - 40517932
Alignment:
| Q |
1 |
cttttaagcttattctttgagggtacaactacggtgactaatcattcaaatcaagtaggatctcgatagtcggtgaaaaaactcttcatcaatatattaa |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40517713 |
cttttaagcttattctttgagggtacaactacagtgactaatcattcaaatcaagtaggatctcgatagtcggtgaaaaaaatcttcatcaatatattaa |
40517812 |
T |
|
| Q |
101 |
acattttcaagctctggtttgtttaatcagcaaaaataaataataagtactagttttaaagattccataggagcctataaatataatactaccttcaaga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40517813 |
acattttcaagctctggtttgtttaatcagcaaaaacaaataataagtactagttttaaagattccataggagcctataaatataatactaccttcaaga |
40517912 |
T |
|
| Q |
201 |
cttgttgtgtgtgatctcgt |
220 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
40517913 |
cttgttgtgtctgatctcgt |
40517932 |
T |
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