View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1580_low_44 (Length: 236)
Name: NF1580_low_44
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_44 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 33742379 - 33742235
Alignment:
| Q |
76 |
aaaatctgaaaatagttttgctaaaataatgtaacagtcatttgcagctctaacagataaaacattcacttgttagtcacctcttcgtcgtcgatatcag |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33742379 |
aaaatctgaaaatagttttgctaaaataatgtaacagtcatttgcagctctaacagataaaacattcacttattagtcacctcttcgtcgtcgatatcag |
33742280 |
T |
|
| Q |
176 |
agaaactttctgattcatcttgagcttctgcagtggagtcatcat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33742279 |
agaaactttctgattcatcttgagcttctgcagtggagtcatcat |
33742235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 33619663 - 33619607
Alignment:
| Q |
125 |
ctaacagataaaacattc-acttgttagtcacctcttcgtcgtcgatatcagagaaa |
180 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33619663 |
ctaacacataaaacattatacttgttagtcacctcttcgtcatcgatatcagagaaa |
33619607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 33729751 - 33729680
Alignment:
| Q |
133 |
taaaacatt-cacttgttagtcacctcttcgtcgtcgatatcagagaaactttctgattcatcttgagcttc |
203 |
Q |
| |
|
||||||||| ||||| ||| ||||||||| ||| || |||||||||||| || ||||||||||||||||||| |
|
|
| T |
33729751 |
taaaacattacacttattaatcacctcttggtcatcaatatcagagaaatttcctgattcatcttgagcttc |
33729680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 33619764 - 33619690
Alignment:
| Q |
55 |
tctatcaaaaagatcatgttcaaaatctgaaaatagttttg-ctaaaataatgtaacagtcatttgcagctctaa |
128 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| || | | |||| ||||||||||||||||||| |||||| |
|
|
| T |
33619764 |
tctaccaaaaagacgatgttcaaaatctgaaaataggttagccaaaaacaatgtaacagtcatttgcatctctaa |
33619690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 33729855 - 33729785
Alignment:
| Q |
58 |
atcaaaaagatcatgttcaaaatctgaaaatagttttgctaaaataatgtaacagtcatttgcagctctaa |
128 |
Q |
| |
|
|||||| ||||||||||||||| | |||||||||||| ||| |||| ||||||||||||||| ||||| |
|
|
| T |
33729855 |
atcaaacagatcatgttcaaaaaccaaaaatagttttgactaaacaatgcaacagtcatttgcagttctaa |
33729785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 33730064 - 33729994
Alignment:
| Q |
58 |
atcaaaaagatcatgttcaaaatctgaaaatagttttgctaaaataatgtaacagtcatttgcagctctaa |
128 |
Q |
| |
|
|||||| ||||||||||||||| | |||||||||||| ||| |||| ||||||||||||||| ||||| |
|
|
| T |
33730064 |
atcaaacagatcatgttcaaaaaccaaaaatagttttgactaaacaatgcaacagtcatttgcagttctaa |
33729994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University