View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_46 (Length: 234)
Name: NF1580_low_46
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 42822885 - 42822686
Alignment:
| Q |
1 |
aaagaaaccggtggtgggtcatgtgaaaagcaatattaacgcttccttttattccttaacaaagtaggtgtttgcatatgtatcagagcatacttttagt |
100 |
Q |
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| T |
42822885 |
aaagaaaccggtggtgggtcgtgtgaaaagcaatattaacgcttcctttttttccttaacaaagtaggtgtttgcatatgtatcagagcatacttttagt |
42822786 |
T |
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| Q |
101 |
taaggtatgcacatttttaggtaatttccaagtttgagtggagattgcattgagtatattttaagtgatgaaatgctataaacttattttcttcaacaac |
200 |
Q |
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| T |
42822785 |
taaggtatgcacatttttagctaatttccaagtttgagtggagattgcattgagtatattttaagtgatgaaatgctataaacttattttcttcaacaac |
42822686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 33072647 - 33072452
Alignment:
| Q |
5 |
aaaccggtggtgggtcatgtgaaaagcaatattaacgcttccttttattccttaacaaagtaggtgtttgcatatgtatcagagcatacttttagttaag |
104 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33072647 |
aaaccggcggtgggtcgtgtgaaaagcaatattaacgcttccttttattcattaacaaagtaggtgtttgcatatgtatcagagcatacttttagttaag |
33072548 |
T |
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| Q |
105 |
gtatgcacatttttaggtaatttccaagtttgagtggagattgcattgagtatattttaagtgatgaaatgctataaacttattttcttcaacaac |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33072547 |
gtatgcacatttttagctaatttccaagtttgagtggagattgcattgagtatattttaagtgatgaaatgctataaacttattttcttcaacaac |
33072452 |
T |
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