View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_48 (Length: 231)
Name: NF1580_low_48
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_48 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 11002226 - 11002456
Alignment:
| Q |
1 |
atgaagctaaggattctgagagtaaaggttgcaagattttgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgc |
100 |
Q |
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| T |
11002226 |
atgaagctaaggattctgagagtaaaggttgcaagattttgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgc |
11002325 |
T |
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| Q |
101 |
tattgaagaaaaagctattaaaggtttgaatgaaggggtatgtgttcctgatggaacaactccatccattttttgtattggacctttgattacatcttct |
200 |
Q |
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| T |
11002326 |
tattgaagaaaaagctattaaaggtttgaatgaaggggtatgtgttcctgatggaacaactccatccattttttgtattggacctttgattacatcttct |
11002425 |
T |
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| Q |
201 |
tatggaggagatgaaaatgggtgtttgattt |
231 |
Q |
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| T |
11002426 |
tatggaggagatgaaaatgggtgtttgattt |
11002456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 37 - 224
Target Start/End: Original strand, 10968082 - 10968269
Alignment:
| Q |
37 |
ttttgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgctattgaagaaaaagctattaaaggtttgaatgaagg |
136 |
Q |
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| T |
10968082 |
ttttccttgaatcggcaaaaactatgaggcaatgtgatggggttattgtgaacacttttgatgctattgagggaaaagctaataaagctttgaatgaagg |
10968181 |
T |
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| Q |
137 |
ggtatgtgttcctgatggaacaactccatccattttttgtattggacctttgattacatcttcttatggaggagatgaaaatgggtgt |
224 |
Q |
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| T |
10968182 |
attatatattcctgatggaactactccatccattttttgtattggaccattgattaccgcttcttatggagaagatgaaaatgagtgt |
10968269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 10982038 - 10982219
Alignment:
| Q |
40 |
tgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgctattgaagaaaaagctattaaaggtttgaatgaaggggt |
139 |
Q |
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| T |
10982038 |
tgcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagctttgaatgaaggatt |
10982137 |
T |
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| Q |
140 |
atgtgttcctgatggaacaactccatccattttttgtattggacctttgattacatcttcttatggaggagatgaaaatgggtgt |
224 |
Q |
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| T |
10982138 |
atttattcctgatgg---tattccatccattttctgtactggacctttgatcgcatcttcatatggagaagatgaaaatgggtgt |
10982219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 11079429 - 11079489
Alignment:
| Q |
63 |
agggaatgtgctgggattattgtgaacacttttgatgctattgaagaaaaagctattaaag |
123 |
Q |
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| T |
11079429 |
agggaaagtgatgggattatcgtaaacactttcgatgctattgaaaagaaagctattaaag |
11079489 |
T |
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