View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_5 (Length: 538)
Name: NF1580_low_5
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-101; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 108 - 378
Target Start/End: Original strand, 11186346 - 11186617
Alignment:
| Q |
108 |
aattatccaactggtaacatgaatttaagccaatgatt-aagtgaatttacagttccaagacttcagagctaacgataataatgcaaattgttctctttc |
206 |
Q |
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|||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
11186346 |
aattatccaactagtaacataaatttaagccaatgattcaagtgaatttacagttccgagacttcagagctaatgataagaatgcaaattgttctctttc |
11186445 |
T |
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| Q |
207 |
ttgcatcttaagcaatcacctactaacataaaattcagcagcgtttatcaatcactcttttgttagagttactataattcttggcatgtatttacgttca |
306 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| |
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| T |
11186446 |
ttgcatctcaagcaatcaactactaacataaaattcagcagcatttatcaatcactcttttgttggagttactataattcttggcatgtatgtaccttca |
11186545 |
T |
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| Q |
307 |
tatcccaattccaaagtctctattcttagcctctattattttgatagaaaccatcaaatttcccataaaata |
378 |
Q |
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| T |
11186546 |
tatcccaactccaaaaacactatacatagcctctattattttcatagaaaccataaaatttcccataaaata |
11186617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 11162862 - 11163027
Alignment:
| Q |
50 |
ttcagagtttttacacggcattcaaacgtcaatgtcgattgaccagttttagcagaacaattatccaactggtaacatgaatttaagccaatgatt-aag |
148 |
Q |
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|||||| |||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
11162862 |
ttcagattttttatacggcattcaaacgtcaatgtcgattaaccagtttaggcagaacaattattcaactggtaacatgaatttaagccaatgattctag |
11162961 |
T |
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| Q |
149 |
tgaatttacagttccaagacttcagagctaacgataataatgcaaattgttctctttcttgcatct |
214 |
Q |
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| T |
11162962 |
tgaatttacaattccaagacttcagagctaatgataataatgcaaattgttgtctttcttgcatct |
11163027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 375 - 476
Target Start/End: Original strand, 11187162 - 11187263
Alignment:
| Q |
375 |
aatatgaacaaggaaatgatttatgtgataaatatcagtccttatgttccctattgttctcagattttattacaagttgatctagattttataatttata |
474 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11187162 |
aatatgaacaaggaaatgatttatgagataaatatcagtccttatgttgcctgttattctcagattttattacaagttgatctagattttataatttata |
11187261 |
T |
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| Q |
475 |
ta |
476 |
Q |
| |
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|| |
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| T |
11187262 |
ta |
11187263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 254 - 378
Target Start/End: Original strand, 11163027 - 11163151
Alignment:
| Q |
254 |
tcaatcactcttttgttagagttactataattcttggcatgtatttacgttcatatcccaattccaaagtctctattcttagcctctattattttgatag |
353 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||| |||||||||| |||||||||||||| ||| |
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| T |
11163027 |
tcaatcactcttttgttggagttactataattcttggcatgtatgtaccttcatatcccaactccaaaaactctattcttggcctctattatttttgtag |
11163126 |
T |
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| Q |
354 |
aaaccatcaaatttcccataaaata |
378 |
Q |
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||||||| ||||||||||||||||| |
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| T |
11163127 |
aaaccataaaatttcccataaaata |
11163151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 521
Target Start/End: Original strand, 11163696 - 11163765
Alignment:
| Q |
450 |
gttgatctagattttataatttatatataaccaaaatattgaaaatcaagtaatcaatggtttatgaattat |
521 |
Q |
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|||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11163696 |
gttgatctagattttataatctata--taaccaaaatattaaaaatcaagtaatcaatggtttatgaattat |
11163765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 270
Target Start/End: Original strand, 11191102 - 11191230
Alignment:
| Q |
146 |
aagtgaatttacagttccaagacttcagagct----aacgataataatgcaaattgttctctttcttgcatcttaagcaatcacctactaacataaaatt |
241 |
Q |
| |
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||||| ||||| |||||||||| ||||||||| | |||| |||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||| |
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| T |
11191102 |
aagtgcatttagagttccaagatttcagagcttctgatcgattgtaatgcaaattgttaactttcttgcatctcaagcaatcatctactaacacaaaatt |
11191201 |
T |
|
| Q |
242 |
cagcagcgtttatcaatcactcttttgtt |
270 |
Q |
| |
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||||||| |||| ||| |||||| |||| |
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| T |
11191202 |
cagcagcatttagaaataactcttctgtt |
11191230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 54888020 - 54887937
Alignment:
| Q |
160 |
ttccaagacttcagagctaacgataataatgcaaattgttctctttcttgcatcttaagcaatcacctactaacataaaattca |
243 |
Q |
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| T |
54888020 |
ttccaagacatcagagctaatgttaataatgcaaatagttttctttcttgcatctcaagcaatcacctacaaacacataattca |
54887937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 54893644 - 54893534
Alignment:
| Q |
160 |
ttccaagacttcagagctaacgataataatgcaaattgttctctttcttgcatcttaagcaatcacctactaacataaaattcagcagcgtttatcaatc |
259 |
Q |
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||||||||| |||||| || | ||||||||||||| |||||||||||||||||| ||||||| ||||| |||| | ||||||| ||| ||| | |||| |
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| T |
54893644 |
ttccaagacatcagagatactgttaataatgcaaatagttctctttcttgcatctcaagcaataacctatcaacacataattcaggagcatttgtaaatc |
54893545 |
T |
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| Q |
260 |
actcttttgtt |
270 |
Q |
| |
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|||||| |||| |
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| T |
54893544 |
actcttctgtt |
54893534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 54904118 - 54904038
Alignment:
| Q |
184 |
aataatgcaaattgttctctttcttgcatcttaagcaatcacctactaacataaaattcagcagcgtttatcaatcactct |
264 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||| ||| |||| | || |||| ||| ||||||||||||||| |
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| T |
54904118 |
aataatgcaaatgtttctctttcttgcatctcaagcaatcacatacaaacacataaatcaggagcatttatcaatcactct |
54904038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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