View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_53 (Length: 225)
Name: NF1580_low_53
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 8479639 - 8479446
Alignment:
| Q |
17 |
tgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattagtttctgtctctgctggtctggattgcacattggctgaatgttcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8479639 |
tgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattcgcttctgtctctgctggtctggattgcacatttgctgaatgttcc |
8479540 |
T |
|
| Q |
117 |
aatgccataacatctaatgatggctgctgatgtgatacggcagtgtcaccactaacattttcctatgaagttgtgacttttgcatctataattt |
210 |
Q |
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| T |
8479539 |
aatgccataacatctaatgatggctgctgatgtgatacggcagtgtcaccacttacattttcctgtggagttgcgacttctgcatctacaattt |
8479446 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 41068005 - 41067812
Alignment:
| Q |
17 |
tgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattagtttctgtctctgctggtctggattgcacattggctgaatgttcc |
116 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41068005 |
tgaaacttcacgcacctgatcagcagtaaactcattagctgctgcacttgaattagcttctgtctctgctggtctggattgcacattagctgaatgttcc |
41067906 |
T |
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| Q |
117 |
aatgccataacatctaatgatggctgctgatgtgatacggcagtgtcaccactaacattttcctatgaagttgtgacttttgcatctataattt |
210 |
Q |
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| T |
41067905 |
aatgccataacatctaatgatggctactgatgtgaaacggcattgtcaccacttacattttcctgtggagttgcgacttctgcatctataattt |
41067812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 10033193 - 10033386
Alignment:
| Q |
17 |
tgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattagtttctgtctctgctggtctggattgcacattggctgaatgttcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||| |||| || ||||||||||||||| | |||||||||| |
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| T |
10033193 |
tgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtttctgttgatctggattgcacatttgttgaatgttcc |
10033292 |
T |
|
| Q |
117 |
aatgccataacatctaatgatggctgctgatgtgatacggcagtgtcaccactaacattttcctatgaagttgtgacttttgcatctataattt |
210 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||||||||| || ||||| ||||| |||||||||||||| |
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| T |
10033293 |
aatgccataacatctaatgatgtctgctgatgtgatacgacagtgtccccacttacattttcctgtggagttgcgacttctgcatctataattt |
10033386 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 19936561 - 19936748
Alignment:
| Q |
17 |
tgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattagtttctgtctctgctggtctggattgcacattggctgaatgttcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||||||||||||||||||||||| ||||| |||||| |
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| T |
19936561 |
tgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattcgcttttgcctctgctggtctggattgcacatttgctgactgttcc |
19936660 |
T |
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| Q |
117 |
aatgccataacatctaatgatggctgctgatgtgatacggcagtgtcaccactaacattttcctatgaagttgtgacttttgcatcta |
204 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||| ||||||| || |||||||| | || ||||| ||||| ||| |||| |
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| T |
19936661 |
aatgccataacagctaatgatggctgctaatgtgatacggcattgtcaccgcttacattttcttgtggagttgcgacttctgcgtcta |
19936748 |
T |
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