View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1580_low_9 (Length: 456)
Name: NF1580_low_9
Description: NF1580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1580_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 47969173 - 47969600
Alignment:
| Q |
19 |
atggcagtaaccgcacttcnnnnnnncaaccttaataaactcttcctcaaaaatcatcatcaaaatgaccataatcactctcaaaccacataacagtaaa |
118 |
Q |
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| T |
47969173 |
atggcagtaaccacacttcaaaaaaacaaccttaataaactcttcctcaaaaatcatcatcaaaatgaccataatcactctcaaaccacataatagtaaa |
47969272 |
T |
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| Q |
119 |
tcatcatgtttctttactcaacctcaaactcagaatcaaagaataaattcacacaacccttttatcaaaaccacttttcaacgttttcacttccacttca |
218 |
Q |
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| T |
47969273 |
tcatcatgtttctttactcaacctcaaactcagaatcaaataacaaattcacacaacccttttatcaaaaccacttttcaacgttttcacttccacttca |
47969372 |
T |
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| Q |
219 |
caccttccaaactcatccacagaaccaaacaaagaacagtagtttcatgtagtaatactcaacaagatatcaaagaaacccataataaactgtccaagac |
318 |
Q |
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| T |
47969373 |
caccttccaaactcatccacagaaccaaacaaagaacagtagtttcatgtagtaatactcaacaagatatcaaagaaacccataataaactgtccaagac |
47969472 |
T |
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| Q |
319 |
caaaatcaatgctctctccgacctcgatgatgatgttgaacttgaacaacacttgtctgggaattggccatcatggaagaatcttccccttagatacaaa |
418 |
Q |
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| T |
47969473 |
caaaatcaatgctctctccgacctcgacgatgatgttgaacttgaacaacacttgtctggcaattggccatcatggaagaatcttccccttagatacaaa |
47969572 |
T |
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| Q |
419 |
ctcattggaactacttcacttgcctttg |
446 |
Q |
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| T |
47969573 |
ctcattggaactacttcacttgcctttg |
47969600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 8375736 - 8375672
Alignment:
| Q |
167 |
tcacacaacccttttatcaaaaccacttttcaacgttttcacttccacttcacaccttccaaact |
231 |
Q |
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| T |
8375736 |
tcacacattccttctatcaaaacttgttttcaacactttcacttccacttcacaccttccaaact |
8375672 |
T |
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