View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1581-INSERTION-1 (Length: 425)

Name: NF1581-INSERTION-1
Description: NF1581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1581-INSERTION-1
NF1581-INSERTION-1
[»] chr3 (31 HSPs)
chr3 (7-425)||(37453056-37453474)
chr3 (246-286)||(46623903-46623943)
chr3 (246-285)||(52939650-52939689)
chr3 (246-284)||(27541537-27541575)
chr3 (246-282)||(26014812-26014848)
chr3 (247-283)||(50886397-50886433)
chr3 (241-281)||(55151746-55151786)
chr3 (249-284)||(38926626-38926661)
chr3 (246-281)||(42357115-42357150)
chr3 (246-281)||(47472330-47472365)
chr3 (239-282)||(52254166-52254209)
chr3 (254-284)||(36639099-36639129)
chr3 (250-284)||(36671053-36671087)
chr3 (230-284)||(37279295-37279349)
chr3 (250-283)||(5114077-5114110)
chr3 (239-283)||(32362932-32362977)
chr3 (239-283)||(33976421-33976466)
chr3 (239-276)||(41717589-41717626)
chr3 (246-286)||(51032658-51032699)
chr3 (246-282)||(5244229-5244265)
chr3 (246-282)||(7668222-7668258)
chr3 (255-283)||(9862532-9862560)
chr3 (256-284)||(10811133-10811161)
chr3 (246-278)||(16129526-16129558)
chr3 (246-282)||(16969601-16969637)
chr3 (246-286)||(20548025-20548065)
chr3 (255-283)||(27168726-27168754)
chr3 (255-283)||(28700471-28700499)
chr3 (246-282)||(37302546-37302582)
chr3 (253-285)||(41448218-41448250)
chr3 (246-282)||(52326019-52326055)
[»] scaffold0481 (1 HSPs)
scaffold0481 (230-282)||(1219-1271)
[»] chr2 (24 HSPs)
chr2 (246-285)||(41042251-41042290)
chr2 (246-287)||(10060457-10060498)
chr2 (246-284)||(6511249-6511287)
chr2 (230-283)||(7438567-7438621)
chr2 (246-284)||(18254244-18254282)
chr2 (246-283)||(27490765-27490802)
chr2 (246-283)||(27695981-27696018)
chr2 (246-282)||(9760017-9760053)
chr2 (247-279)||(36193760-36193792)
chr2 (246-285)||(9207587-9207626)
chr2 (246-285)||(9647141-9647180)
chr2 (246-285)||(38874650-38874689)
chr2 (246-284)||(43057062-43057101)
chr2 (239-281)||(1248687-1248729)
chr2 (230-284)||(4969551-4969605)
chr2 (246-292)||(37738000-37738046)
chr2 (246-279)||(8848730-8848763)
chr2 (246-283)||(30831755-30831792)
chr2 (239-286)||(1574592-1574640)
chr2 (246-282)||(2076569-2076605)
chr2 (250-282)||(22888860-22888892)
chr2 (246-282)||(42421933-42421969)
chr2 (255-283)||(43487378-43487406)
chr2 (246-282)||(44287475-44287511)
[»] scaffold0020 (1 HSPs)
scaffold0020 (245-283)||(165472-165510)
[»] chr7 (21 HSPs)
chr7 (246-291)||(47391349-47391395)
chr7 (246-284)||(13152591-13152629)
chr7 (230-283)||(17117173-17117226)
chr7 (246-283)||(25192919-25192956)
chr7 (246-283)||(44895607-44895644)
chr7 (246-282)||(30941386-30941422)
chr7 (240-283)||(22918470-22918513)
chr7 (255-285)||(46880899-46880929)
chr7 (246-283)||(26749016-26749053)
chr7 (246-287)||(38861091-38861132)
chr7 (246-283)||(41989765-41989802)
chr7 (246-283)||(43942648-43942685)
chr7 (246-282)||(2362664-2362700)
chr7 (255-283)||(12007230-12007258)
chr7 (239-283)||(28566080-28566123)
chr7 (239-282)||(32777734-32777778)
chr7 (255-283)||(37352109-37352137)
chr7 (246-282)||(38956651-38956687)
chr7 (239-278)||(40077394-40077434)
chr7 (246-282)||(44189345-44189381)
chr7 (255-283)||(47448825-47448853)
[»] chr5 (21 HSPs)
chr5 (239-284)||(33037518-33037563)
chr5 (246-283)||(1274357-1274394)
chr5 (246-283)||(7076424-7076461)
chr5 (246-283)||(14923082-14923119)
chr5 (239-291)||(15479459-15479512)
chr5 (246-283)||(18660758-18660795)
chr5 (246-282)||(28306167-28306203)
chr5 (239-282)||(39807742-39807785)
chr5 (246-284)||(18258828-18258866)
chr5 (246-284)||(19522038-19522076)
chr5 (253-283)||(24468328-24468358)
chr5 (253-287)||(27546321-27546355)
chr5 (253-282)||(1981890-1981919)
chr5 (253-282)||(13332332-13332361)
chr5 (255-284)||(17097846-17097875)
chr5 (246-283)||(26791279-26791316)
chr5 (255-283)||(13089826-13089854)
chr5 (247-282)||(19824122-19824158)
chr5 (250-282)||(22649700-22649732)
chr5 (239-283)||(26626707-26626751)
chr5 (246-282)||(35634871-35634907)
[»] chr4 (31 HSPs)
chr4 (245-286)||(29531639-29531680)
chr4 (246-289)||(2004223-2004267)
chr4 (230-282)||(23719572-23719624)
chr4 (246-286)||(45082977-45083017)
chr4 (246-284)||(36177904-36177942)
chr4 (246-283)||(23369367-23369404)
chr4 (246-283)||(37297048-37297085)
chr4 (246-283)||(43174983-43175020)
chr4 (246-286)||(48494935-48494976)
chr4 (246-282)||(5622458-5622494)
chr4 (246-282)||(37997256-37997292)
chr4 (246-282)||(39440484-39440520)
chr4 (246-281)||(2268542-2268577)
chr4 (246-285)||(39605976-39606015)
chr4 (253-283)||(7146162-7146192)
chr4 (246-283)||(20118780-20118818)
chr4 (246-292)||(26910193-26910238)
chr4 (255-284)||(19473988-19474017)
chr4 (255-292)||(29227287-29227324)
chr4 (250-283)||(38134352-38134385)
chr4 (255-284)||(50506391-50506420)
chr4 (246-282)||(10250550-10250586)
chr4 (246-282)||(12706163-12706199)
chr4 (255-283)||(22813754-22813782)
chr4 (246-278)||(26732229-26732261)
chr4 (239-278)||(33860438-33860478)
chr4 (240-283)||(42510812-42510856)
chr4 (255-283)||(44539735-44539763)
chr4 (246-282)||(46634100-46634136)
chr4 (246-285)||(50721779-50721819)
chr4 (255-283)||(51255745-51255773)
[»] chr1 (31 HSPs)
chr1 (239-287)||(44519179-44519227)
chr1 (246-289)||(45333563-45333606)
chr1 (246-283)||(2571634-2571671)
chr1 (241-282)||(5466364-5466405)
chr1 (246-283)||(8350231-8350268)
chr1 (246-283)||(15083085-15083122)
chr1 (246-283)||(33100807-33100844)
chr1 (246-282)||(3159376-3159412)
chr1 (246-282)||(37685331-37685367)
chr1 (246-282)||(37700151-37700187)
chr1 (246-284)||(30735328-30735366)
chr1 (246-283)||(3982066-3982103)
chr1 (255-284)||(9567005-9567034)
chr1 (239-291)||(23554890-23554943)
chr1 (230-271)||(29936756-29936797)
chr1 (253-286)||(34157516-34157549)
chr1 (246-283)||(35369699-35369736)
chr1 (230-283)||(41410950-41411003)
chr1 (255-284)||(45121537-45121566)
chr1 (255-283)||(4213071-4213099)
chr1 (256-284)||(16250312-16250340)
chr1 (255-291)||(22674703-22674739)
chr1 (246-282)||(23645411-23645447)
chr1 (246-285)||(25989018-25989058)
chr1 (246-282)||(27465092-27465128)
chr1 (239-282)||(33076119-33076163)
chr1 (230-278)||(35414608-35414656)
chr1 (246-282)||(37275068-37275104)
chr1 (230-285)||(43893254-43893310)
chr1 (255-283)||(48983712-48983740)
chr1 (239-282)||(51168656-51168700)
[»] chr6 (10 HSPs)
chr6 (246-283)||(1156720-1156757)
chr6 (246-283)||(22079598-22079635)
chr6 (246-282)||(8098630-8098666)
chr6 (246-282)||(25811873-25811909)
chr6 (246-282)||(34047387-34047423)
chr6 (246-285)||(20712064-20712103)
chr6 (246-284)||(32316963-32317001)
chr6 (247-284)||(552791-552828)
chr6 (255-283)||(17551423-17551451)
chr6 (246-282)||(18737590-18737626)
[»] scaffold0098 (1 HSPs)
scaffold0098 (239-283)||(49294-49338)
[»] scaffold0003 (1 HSPs)
scaffold0003 (246-282)||(366294-366330)
[»] chr8 (19 HSPs)
chr8 (246-282)||(22719440-22719476)
chr8 (246-282)||(27325758-27325794)
chr8 (246-282)||(31249559-31249595)
chr8 (246-282)||(43397781-43397817)
chr8 (247-282)||(4054322-4054357)
chr8 (248-283)||(34810678-34810713)
chr8 (256-286)||(16487606-16487636)
chr8 (246-283)||(33100503-33100541)
chr8 (239-292)||(33107894-33107948)
chr8 (255-284)||(5849610-5849639)
chr8 (246-283)||(24479235-24479272)
chr8 (246-283)||(37449460-37449497)
chr8 (253-282)||(42733607-42733636)
chr8 (255-283)||(5772016-5772044)
chr8 (246-282)||(7271852-7271888)
chr8 (246-289)||(9048350-9048394)
chr8 (246-281)||(10839516-10839552)
chr8 (255-283)||(28772168-28772196)
chr8 (246-282)||(32501231-32501267)
[»] scaffold0067 (1 HSPs)
scaffold0067 (246-281)||(35524-35559)
[»] scaffold0257 (1 HSPs)
scaffold0257 (256-289)||(23974-24007)
[»] scaffold0115 (1 HSPs)
scaffold0115 (245-292)||(15221-15269)


Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Complemental strand, 37453474 - 37453056
Alignment:
Q  7 aattctgtatattttacttacttgctctagtcccaaggagtagatggccatatgggaagaaagattgattagtatattactgaatttataaatggtagag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37453474 aattctgtatattttacttacttgctctagtcccaaggagtagatggccatatgggaagaaagattgattagtatattactgaatttataaatggtagag 37453375  T
Q  107 agtcctgcaaagaaagatcgattagtatattactcaatttgtaaatggtagagagtcctgcaaagtctgaattttgtatcgaaactagacaaataggttg 206  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37453374 agtcctgcaaagaaagatcgattagtatattactgaatttgtaaatggtagagagtcctgcaaagtctgaattttgtatcgaaactagacaaataggttg 37453275  T
Q  207 ttcccatatctaaacttcgaagtagagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctctatatttaaactttgaaattcaag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37453274 ttcccatatctaaacttcgaagtagagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctctatatttaaactttgaaattcaag 37453175  T
Q  307 caaaacaagttgtccacgtatgcagttaatttttatttttatttgtgtaatgactaaagatgtttgcttctttatgagttgctggtggttcagtcagtta 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37453174 caaaacaagttgtccacgtatgcagttaatttttatttttatttgtgtaatgactaaatatgtttgcttctttatgagttgctggtggttcagtcagtta 37453075  T
Q  407 tttagctgacagcatagta 425  Q
    |||||||||||||||||||    
T  37453074 tttagctgacagcatagta 37453056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 46623943 - 46623903
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctata 286  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  46623943 aaagttgtaaaaaatggttgttcaaatatcatttctctata 46623903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 52939689 - 52939650
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctat 285  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  52939689 aaagttgtaaaaaatggttgttcaaatatcatttctctat 52939650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 27541537 - 27541575
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  27541537 aaagttgtaaaaaatggttgttcaaatatcatttctcta 27541575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 26014848 - 26014812
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  26014848 aaagttgtaaaaaatggttgttcaaatatcatttctc 26014812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 50886433 - 50886397
Alignment:
Q  247 aagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    ||||||||||||||| |||||||||||||||||||||    
T  50886433 aagttgttaaaaatgattgttcaaatatcatttctct 50886397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 55151746 - 55151786
Alignment:
Q  241 tcatcaaagttgttaaaaatggttgttcaaatatcatttct 281  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  55151746 tcataaaagttgtcaaaaatggttgttcaaatatcatttct 55151786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 284
Target Start/End: Complemental strand, 38926661 - 38926626
Alignment:
Q  249 gttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    ||||| ||||||||||||||||||||||||||||||    
T  38926661 gttgtaaaaaatggttgttcaaatatcatttctcta 38926626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 281
Target Start/End: Original strand, 42357115 - 42357150
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttct 281  Q
    |||||||| |||||||||||||||||||||||||||    
T  42357115 aaagttgtaaaaaatggttgttcaaatatcatttct 42357150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 47472365 - 47472330
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttct 281  Q
    |||||||| |||||||||||||||||||||||||||    
T  47472365 aaagttgtaaaaaatggttgttcaaatatcatttct 47472330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 52254166 - 52254209
Alignment:
Q  239 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||| |||||||| || |||||||||||||||||||||||||    
T  52254166 tgtcataaaagttgtaaacaatggttgttcaaatatcatttctc 52254209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 284
Target Start/End: Complemental strand, 36639129 - 36639099
Alignment:
Q  254 taaaaatggttgttcaaatatcatttctcta 284  Q
    |||||||||||||||||||||||||||||||    
T  36639129 taaaaatggttgttcaaatatcatttctcta 36639099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 284
Target Start/End: Original strand, 36671053 - 36671087
Alignment:
Q  250 ttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    |||| ||||||||||||||||||||||||||||||    
T  36671053 ttgtaaaaaatggttgttcaaatatcatttctcta 36671087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 37279295 - 37279349
Alignment:
Q  230 agagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    |||||||| | ||||||||||||||||||||| ||||  |||||||||| |||||    
T  37279295 agagagaattatcatcaaagttgttaaaaatgattgtcaaaatatcattcctcta 37279349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 5114110 - 5114077
Alignment:
Q  250 ttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||| |||||||||||||||||||||||||||||    
T  5114110 ttgtaaaaaatggttgttcaaatatcatttctct 5114077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 32362977 - 32362932
Alignment:
Q  239 tgtcatcaaagttgttaaaaa-tggttgttcaaatatcatttctct 283  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||    
T  32362977 tgtcataaaagttgtcaaaaaatggttgttcaaatatcatttctct 32362932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 33976421 - 33976466
Alignment:
Q  239 tgtcatcaaagttgtta-aaaatggttgttcaaatatcatttctct 283  Q
    |||||| |||||||||| ||||||| ||||||||||||||||||||    
T  33976421 tgtcataaaagttgttacaaaatggatgttcaaatatcatttctct 33976466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 41717589 - 41717626
Alignment:
Q  239 tgtcatcaaagttgttaaaaatggttgttcaaatatca 276  Q
    |||||| | |||||||||||||||||||||||||||||    
T  41717589 tgtcatgatagttgttaaaaatggttgttcaaatatca 41717626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 51032658 - 51032699
Alignment:
Q  246 aaagttgtta-aaaatggttgttcaaatatcatttctctata 286  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  51032658 aaagttgttagaaaatggttgtacaaatatcatttctctata 51032699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 5244265 - 5244229
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  5244265 aaagttgtaaaatatggttgttcaaatatcatttctc 5244229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 7668222 - 7668258
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  7668222 aaagttgtaaaaaatgattgttcaaatatcatttctc 7668258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 9862560 - 9862532
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  9862560 aaaaatggttgttcaaatatcatttctct 9862532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 284
Target Start/End: Complemental strand, 10811161 - 10811133
Alignment:
Q  256 aaaatggttgttcaaatatcatttctcta 284  Q
    |||||||||||||||||||||||||||||    
T  10811161 aaaatggttgttcaaatatcatttctcta 10811133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 16129558 - 16129526
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatt 278  Q
    |||||||| ||||||||||||||||||||||||    
T  16129558 aaagttgtaaaaaatggttgttcaaatatcatt 16129526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 16969601 - 16969637
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  16969601 aaagttgtcaaaaatggttgttaaaatatcatttctc 16969637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 20548025 - 20548065
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctata 286  Q
    |||||||| |||| || ||||||||||||||||||||||||    
T  20548025 aaagttgtaaaaactgattgttcaaatatcatttctctata 20548065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 27168726 - 27168754
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  27168726 aaaaatggttgttcaaatatcatttctct 27168754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 28700499 - 28700471
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  28700499 aaaaatggttgttcaaatatcatttctct 28700471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 37302582 - 37302546
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  37302582 aaagttgtaaaaaatggttgttaaaatatcatttctc 37302546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 41448218 - 41448250
Alignment:
Q  253 ttaaaaatggttgttcaaatatcatttctctat 285  Q
    |||||||||||||| ||||||||||||||||||    
T  41448218 ttaaaaatggttgtacaaatatcatttctctat 41448250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 52326055 - 52326019
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| |||||||||| |||||||||||||||||    
T  52326055 aaagttgtaaaaaatggttattcaaatatcatttctc 52326019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 1219 - 1271
Alignment:
Q  230 agagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  1219 agagagaattgtcatcaaagttgttaaaagtggttgtttaaatatcatttctc 1271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 41042290 - 41042251
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctat 285  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41042290 aaagttgttaaaaatggttgttcaaatatcatttctctat 41042251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 10060457 - 10060498
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctatat 287  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  10060457 aaagttgttaaaaatggttgttcaaatatcattgctctatat 10060498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 6511287 - 6511249
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  6511287 aaagttgtaaaaaatggttgttcaaatatcatttctcta 6511249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 7438621 - 7438567
Alignment:
Q  230 agagagaactgtcatcaaagttgtt-aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||  |||||| ||||||||| |||||||||||||||||||||||||||||    
T  7438621 agagagagttgtcataaaagttgtttaaaaatggttgttcaaatatcatttctct 7438567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 18254244 - 18254282
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  18254244 aaagttgtaaaaaatggttgttcaaatatcatttctcta 18254282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 27490765 - 27490802
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  27490765 aaagttgtcaaaaatggttgttcaaatatcatttctct 27490802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 27695981 - 27696018
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  27695981 aaagttgtcaaaaatggttgttcaaatatcatttctct 27696018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 9760053 - 9760017
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  9760053 aaagttgtaaaaaatggttgttcaaatatcatttctc 9760017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 36193760 - 36193792
Alignment:
Q  247 aagttgttaaaaatggttgttcaaatatcattt 279  Q
    |||||||||||||||||||||||||||||||||    
T  36193760 aagttgttaaaaatggttgttcaaatatcattt 36193792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 9207626 - 9207587
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctat 285  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  9207626 aaagttgtaaaaaatgattgttcaaatatcatttctctat 9207587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 9647180 - 9647141
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctat 285  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  9647180 aaagttgtaaaaaatagttgttcaaatatcatttctctat 9647141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 38874650 - 38874689
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctat 285  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  38874650 aaagttattaaaaatggttgtttaaatatcatttctctat 38874689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 43057101 - 43057062
Alignment:
Q  246 aaagttgttaaaaa-tggttgttcaaatatcatttctcta 284  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  43057101 aaagttgttaaaaagtggttgttcaaatatcatttctcta 43057062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 1248729 - 1248687
Alignment:
Q  239 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttct 281  Q
    |||||| |||||||| |||||||||||||||||||| ||||||    
T  1248729 tgtcataaaagttgtaaaaaatggttgttcaaatattatttct 1248687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 4969551 - 4969605
Alignment:
Q  230 agagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    |||||||  ||||| ||||||||||||||||||||||  |||||||||| |||||    
T  4969551 agagagagttgtcaccaaagttgttaaaaatggttgtcaaaatatcattcctcta 4969605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 37738000 - 37738046
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctatatttaaa 292  Q
    ||||||||  ||||||||||||||||||||||||||| | |||||||    
T  37738000 aaagttgtcgaaaatggttgttcaaatatcatttctcaaaatttaaa 37738046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 8848730 - 8848763
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcattt 279  Q
    |||||||| |||||||||||||||||||||||||    
T  8848730 aaagttgtcaaaaatggttgttcaaatatcattt 8848763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 30831792 - 30831755
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  30831792 aaagttgtcaaaaatggttgttcaaatataatttctct 30831755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 1574592 - 1574640
Alignment:
Q  239 tgtcatcaaagttgttaa-aaatggttgttcaaatatcatttctctata 286  Q
    |||||| ||||||||||  |||||||||||||||||||||| |||||||    
T  1574592 tgtcattaaagttgttagcaaatggttgttcaaatatcattgctctata 1574640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 2076605 - 2076569
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  2076605 aaagttgtaaaaaatggttgttcaaatatcgtttctc 2076569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 22888860 - 22888892
Alignment:
Q  250 ttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||| ||||||||||||||||||||||||||||    
T  22888860 ttgtcaaaaatggttgttcaaatatcatttctc 22888892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 42421933 - 42421969
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| |||||||||||||| |||||||||||||    
T  42421933 aaagttgtaaaaaatggttgttcgaatatcatttctc 42421969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 43487406 - 43487378
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  43487406 aaaaatggttgttcaaatatcatttctct 43487378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 44287475 - 44287511
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| |||||| |||||||||||||||||||||    
T  44287475 aaagttgtaaaaaatagttgttcaaatatcatttctc 44287511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 165510 - 165472
Alignment:
Q  245 caaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||||||||||||    
T  165510 caaagttgttaaaaatggttgttcaaatatcatttctct 165472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 47391349 - 47391395
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttct-ctatatttaa 291  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  47391349 aaagttgttaaaaatggttgttcaaatatcatttctcctatatttaa 47391395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 13152629 - 13152591
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  13152629 aaagttgtcaaaaatggttgttcaaatatcatttctcta 13152591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 17117173 - 17117226
Alignment:
Q  230 agagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||  ||||| ||||||||||||||| ||||||||||||| |||||||||    
T  17117173 agagagagttgtcaccaaagttgttaaaaagggttgttcaaataacatttctct 17117226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 25192919 - 25192956
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  25192919 aaagttgtaaaaaatggttgttcaaatatcatttctct 25192956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 44895607 - 44895644
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  44895607 aaagttgtaaaaaatggttgttcaaatatcatttctct 44895644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 30941422 - 30941386
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  30941422 aaagttgtaaaaaatggttgttcaaatatcatttctc 30941386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 22918470 - 22918513
Alignment:
Q  240 gtcatcaaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    ||||| ||| |||| |||||||||||||||||||||||||||||    
T  22918470 gtcataaaaattgtaaaaaatggttgttcaaatatcatttctct 22918513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 285
Target Start/End: Complemental strand, 46880929 - 46880899
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctctat 285  Q
    |||||||||||||||||||||||||||||||    
T  46880929 aaaaatggttgttcaaatatcatttctctat 46880899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 26749053 - 26749016
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  26749053 aaagttgtcaaaaattgttgttcaaatatcatttctct 26749016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 38861132 - 38861091
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctatat 287  Q
    |||||||| ||||||| |||||||||||||||||||| ||||    
T  38861132 aaagttgtaaaaaatgattgttcaaatatcatttctcaatat 38861091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 41989765 - 41989802
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  41989765 aaagttgtaaaaaatggttgttaaaatatcatttctct 41989802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 43942685 - 43942648
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  43942685 aaagttgtaaaaaatagttgttcaaatatcatttctct 43942648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 2362700 - 2362664
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  2362700 aaagttgtaaaaaatggttgttcatatatcatttctc 2362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 12007230 - 12007258
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  12007230 aaaaatggttgttcaaatatcatttctct 12007258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 28566080 - 28566123
Alignment:
Q  239 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||||    
T  28566080 tgtcatcaaa-ttgttaaaaatagttattcaaatatcatttctct 28566123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 32777734 - 32777778
Alignment:
Q  239 tgtcatcaaagttgttaaaa-atggttgttcaaatatcatttctc 282  Q
    |||||| |||||||| |||| ||||||||||||||||||||||||    
T  32777734 tgtcataaaagttgtcaaaaaatggttgttcaaatatcatttctc 32777778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 37352137 - 37352109
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  37352137 aaaaatggttgttcaaatatcatttctct 37352109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 38956651 - 38956687
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  38956651 aaagttgtaaaaaatggttgtttaaatatcatttctc 38956687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 40077394 - 40077434
Alignment:
Q  239 tgtcatcaaagttgttaa-aaatggttgttcaaatatcatt 278  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  40077394 tgtcataaaagttgttaacaaatggttgttcaaatatcatt 40077434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 44189345 - 44189381
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||| | ||||||||||||||||||||||||||||    
T  44189345 aaagttataaaaaatggttgttcaaatatcatttctc 44189381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 47448853 - 47448825
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  47448853 aaaaatggttgttcaaatatcatttctct 47448825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 33037563 - 33037518
Alignment:
Q  239 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||    
T  33037563 tgtcataaaagttgtaaaaaatggttgttcaaatatcatttctcta 33037518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 1274394 - 1274357
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  1274394 aaagttgtcaaaaatggttgttcaaatatcatttctct 1274357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 7076461 - 7076424
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  7076461 aaagttgtaaaaaatggttgttcaaatatcatttctct 7076424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 14923119 - 14923082
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  14923119 aaagttgtaaaaaatggttgttcaaatatcatttctct 14923082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 15479512 - 15479459
Alignment:
Q  239 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctc-tatatttaa 291  Q
    |||||| |||||||| ||||||| |||||||||||||||||||| |||||||||    
T  15479512 tgtcataaaagttgtaaaaaatgattgttcaaatatcatttctcatatatttaa 15479459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 18660795 - 18660758
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  18660795 aaagttgtcaaaaatggttgttcaaatatcatttctct 18660758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 28306167 - 28306203
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  28306167 aaagttgtaaaaaatggttgttcaaatatcatttctc 28306203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 39807742 - 39807785
Alignment:
Q  239 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||| ||| |||| ||||||||||||||||||||||||||||    
T  39807742 tgtcataaaaattgtaaaaaatggttgttcaaatatcatttctc 39807785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 18258828 - 18258866
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  18258828 aaagttataaaaaatggttgttcaaatatcatttctcta 18258866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 19522038 - 19522076
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  19522038 aaagttgtaaaaaatggttgttcaaatatcatttttcta 19522076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 283
Target Start/End: Original strand, 24468328 - 24468358
Alignment:
Q  253 ttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||||    
T  24468328 ttaaaaatggttgttcaaatatcatttctct 24468358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 27546355 - 27546321
Alignment:
Q  253 ttaaaaatggttgttcaaatatcatttctctatat 287  Q
    ||||||||||||||||||| |||||||||||||||    
T  27546355 ttaaaaatggttgttcaaacatcatttctctatat 27546321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 1981919 - 1981890
Alignment:
Q  253 ttaaaaatggttgttcaaatatcatttctc 282  Q
    ||||||||||||||||||||||||||||||    
T  1981919 ttaaaaatggttgttcaaatatcatttctc 1981890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 13332361 - 13332332
Alignment:
Q  253 ttaaaaatggttgttcaaatatcatttctc 282  Q
    ||||||||||||||||||||||||||||||    
T  13332361 ttaaaaatggttgttcaaatatcatttctc 13332332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Original strand, 17097846 - 17097875
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctcta 284  Q
    ||||||||||||||||||||||||||||||    
T  17097846 aaaaatggttgttcaaatatcatttctcta 17097875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 26791279 - 26791316
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  26791279 aaagttgtaaaaaatggttgttcaaatattatttctct 26791316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 13089826 - 13089854
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  13089826 aaaaatggttgttcaaatatcatttctct 13089854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 19824158 - 19824122
Alignment:
Q  247 aagttgttaa-aaatggttgttcaaatatcatttctc 282  Q
    |||||||||| ||||||||||||||||||||||||||    
T  19824158 aagttgttaacaaatggttgttcaaatatcatttctc 19824122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 22649700 - 22649732
Alignment:
Q  250 ttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||| ||||||||||||||||||||||||||||    
T  22649700 ttgtaaaaaatggttgttcaaatatcatttctc 22649732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 26626751 - 26626707
Alignment:
Q  239 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||    
T  26626751 tgtcatgaaagttgtaacaaatggttgttcaaatatcattgctct 26626707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 35634871 - 35634907
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  35634871 aaagttgtcaaaaatgattgttcaaatatcatttctc 35634907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 29531639 - 29531680
Alignment:
Q  245 caaagttgttaaaaatggttgttcaaatatcatttctctata 286  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  29531639 caaagttgtaaaaaatggttgttcaaatatcatttctctata 29531680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 2004223 - 2004267
Alignment:
Q  246 aaagttgttaaaa-atggttgttcaaatatcatttctctatattt 289  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  2004223 aaagttgttaaaaaatggttgttcaaatatcatttctctatattt 2004267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 23719572 - 23719624
Alignment:
Q  230 agagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||  |||||||||| |||||||||||||||||| ||||||||||||||    
T  23719572 agagagagttgtcatcaaaattgttaaaaatggttgtttaaatatcatttctc 23719624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 45083017 - 45082977
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctata 286  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  45083017 aaagttgtcaaaaatggttgttcaaatatcatttctctata 45082977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 36177942 - 36177904
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  36177942 aaagttgtaaaaaatggttgttcaaatatcatttctcta 36177904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 23369367 - 23369404
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  23369367 aaagttgtaaaaaatggttgttcaaatatcatttctct 23369404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 37297085 - 37297048
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  37297085 aaagttgtaaaaaatggttgttcaaatatcatttctct 37297048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 43175020 - 43174983
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  43175020 aaagttgtaaaaaatggttgttcaaatatcatttctct 43174983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 48494935 - 48494976
Alignment:
Q  246 aaagttgttaaaaa-tggttgttcaaatatcatttctctata 286  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  48494935 aaagttgttaaaaagtggttgttcaaatatcatttctctata 48494976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 5622494 - 5622458
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  5622494 aaagttgtaaaaaatggttgttcaaatatcatttctc 5622458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 37997292 - 37997256
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  37997292 aaagttgtaaaaaatggttgttcaaatatcatttctc 37997256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 39440520 - 39440484
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  39440520 aaagttgtaaaaaatggttgttcaaatatcatttctc 39440484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 281
Target Start/End: Original strand, 2268542 - 2268577
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttct 281  Q
    ||||||||||||||||| ||||||||||||||||||    
T  2268542 aaagttgttaaaaatggatgttcaaatatcatttct 2268577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 39606015 - 39605976
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctat 285  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  39606015 aaagttgtcaaaaatggttgttcatatatcatttctctat 39605976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 283
Target Start/End: Original strand, 7146162 - 7146192
Alignment:
Q  253 ttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||||    
T  7146162 ttaaaaatggttgttcaaatatcatttctct 7146192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 20118818 - 20118780
Alignment:
Q  246 aaagttgtta-aaaatggttgttcaaatatcatttctct 283  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  20118818 aaagttgttataaaatggttgttcaaatatcatttctct 20118780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 26910238 - 26910193
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctatatttaaa 292  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||    
T  26910238 aaagttgtaaaaaatggtt-ttcaaatatcatttctctataattaaa 26910193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Original strand, 19473988 - 19474017
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctcta 284  Q
    ||||||||||||||||||||||||||||||    
T  19473988 aaaaatggttgttcaaatatcatttctcta 19474017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 29227287 - 29227324
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctctatatttaaa 292  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  29227287 aaaagtggttgttcaaatatcatttctctatagttaaa 29227324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 38134385 - 38134352
Alignment:
Q  250 ttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||| |||||||||||||||||||||||||||||    
T  38134385 ttgtaaaaaatggttgttcaaatatcatttctct 38134352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Complemental strand, 50506420 - 50506391
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctcta 284  Q
    ||||||||||||||||||||||||||||||    
T  50506420 aaaaatggttgttcaaatatcatttctcta 50506391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 10250550 - 10250586
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| |||||| |||||||||||||||||||||    
T  10250550 aaagttgtaaaaaatagttgttcaaatatcatttctc 10250586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 12706199 - 12706163
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  12706199 aaagttgttgaaaatggatgttcaaatatcatttctc 12706163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 22813754 - 22813782
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  22813754 aaaaatggttgttcaaatatcatttctct 22813782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 26732261 - 26732229
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatt 278  Q
    |||||||| ||||||||||||||||||||||||    
T  26732261 aaagttgtgaaaaatggttgttcaaatatcatt 26732229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 33860478 - 33860438
Alignment:
Q  239 tgtcatcaaagttgttaa-aaatggttgttcaaatatcatt 278  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  33860478 tgtcatcaaagttgttagcaaatggttgttcaaatatcatt 33860438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 42510856 - 42510812
Alignment:
Q  240 gtcatcaaagttgttaa-aaatggttgttcaaatatcatttctct 283  Q
    ||||||||||||||||  |||||||||||||||||||||| ||||    
T  42510856 gtcatcaaagttgttagcaaatggttgttcaaatatcattgctct 42510812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 44539763 - 44539735
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  44539763 aaaaatggttgttcaaatatcatttctct 44539735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 46634136 - 46634100
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  46634136 aaagttgtaaaaaatgattgttcaaatatcatttctc 46634100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 50721779 - 50721819
Alignment:
Q  246 aaagttgttaaaaat-ggttgttcaaatatcatttctctat 285  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  50721779 aaagttgtcaaaaattggttgttcaaatatcatttctctat 50721819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 51255773 - 51255745
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  51255773 aaaaatggttgttcaaatatcatttctct 51255745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 44519179 - 44519227
Alignment:
Q  239 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctctatat 287  Q
    |||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  44519179 tgtcataaaagttgtcaaaaatggttgttcatatatcatttctctatat 44519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 45333606 - 45333563
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctatattt 289  Q
    |||||||| ||||||| |||||||||||||||||||||||||||    
T  45333606 aaagttgtaaaaaatgattgttcaaatatcatttctctatattt 45333563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 2571671 - 2571634
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  2571671 aaagttgtaaaaaatggttgttcaaatatcatttctct 2571634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 5466364 - 5466405
Alignment:
Q  241 tcatcaaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  5466364 tcatcaaagttgttaaaaatgattgtttaaatatcatttctc 5466405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 8350231 - 8350268
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  8350231 aaagttgtaaaaaatggttgttcaaatatcatttctct 8350268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 15083085 - 15083122
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  15083085 aaagttgtcaaaaatggttgttcaaatatcatttctct 15083122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 33100844 - 33100807
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  33100844 aaagttgtaaaaaatggttgttcaaatatcatttctct 33100807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 3159412 - 3159376
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  3159412 aaagttgtaaaaaatggttgttcaaatatcatttctc 3159376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 37685367 - 37685331
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  37685367 aaagttgtaaaaaatggttgttcaaatatcatttctc 37685331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 37700151 - 37700187
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  37700151 aaagttgtaaaaaatggttgttcaaatatcatttctc 37700187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 30735328 - 30735366
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  30735328 aaagttgtaaaaaatggttgttcaaatatcatttatcta 30735366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 3982066 - 3982103
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  3982066 aaagttgtaaaaaaaggttgttcaaatatcatttctct 3982103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Original strand, 9567005 - 9567034
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctcta 284  Q
    ||||||||||||||||||||||||||||||    
T  9567005 aaaaatggttgttcaaatatcatttctcta 9567034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 23554890 - 23554943
Alignment:
Q  239 tgtcatcaaagttgttaa-aaatggttgttcaaatatcatttctctatatttaa 291  Q
    |||||| ||||||||||  |||||||||||||||||||||| |||||| |||||    
T  23554890 tgtcatgaaagttgttagcaaatggttgttcaaatatcattgctctatttttaa 23554943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 29936797 - 29936756
Alignment:
Q  230 agagagaactgtcatcaaagttgttaaaaatggttgttcaaa 271  Q
    |||||||  ||||| |||||||||||||||||||||||||||    
T  29936797 agagagagttgtcaccaaagttgttaaaaatggttgttcaaa 29936756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 34157549 - 34157516
Alignment:
Q  253 ttaaaaatggttgttcaaatatcatttctctata 286  Q
    |||||||||||||| |||||||||||||||||||    
T  34157549 ttaaaaatggttgtacaaatatcatttctctata 34157516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 35369736 - 35369699
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  35369736 aaagttgtaaaaaatgattgttcaaatatcatttctct 35369699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 41411003 - 41410950
Alignment:
Q  230 agagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| ||||| |||| |||||||||||||||||  |||||||||| ||||    
T  41411003 agagagaattgtcaccaaaattgttaaaaatggttgtcaaaatatcattcctct 41410950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Original strand, 45121537 - 45121566
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctcta 284  Q
    ||||||||||||||||||||||||||||||    
T  45121537 aaaaatggttgttcaaatatcatttctcta 45121566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Complemental strand, 4213099 - 4213071
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  4213099 aaaaatggttgttcaaatatcatttctct 4213071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 284
Target Start/End: Complemental strand, 16250340 - 16250312
Alignment:
Q  256 aaaatggttgttcaaatatcatttctcta 284  Q
    |||||||||||||||||||||||||||||    
T  16250340 aaaatggttgttcaaatatcatttctcta 16250312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 22674739 - 22674703
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctctatatttaa 291  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  22674739 aaaaatagttgtacaaatatcatttctctatatttaa 22674703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 23645447 - 23645411
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| |||||||||||| |||||||||||||||    
T  23645447 aaagttgtaaaaaatggttgtccaaatatcatttctc 23645411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 25989018 - 25989058
Alignment:
Q  246 aaagttgttaaaa-atggttgttcaaatatcatttctctat 285  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  25989018 aaagttgttaaaaaatggttgtacaaatatcatttctctat 25989058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 27465092 - 27465128
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  27465092 aaagttgtaaaaaatggttgtttaaatatcatttctc 27465128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 33076163 - 33076119
Alignment:
Q  239 tgtcatcaaagttgtta-aaaatggttgttcaaatatcatttctc 282  Q
    |||||| |||||||||| ||||||||||| |||||||||||||||    
T  33076163 tgtcataaaagttgttagaaaatggttgtacaaatatcatttctc 33076119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 35414608 - 35414656
Alignment:
Q  230 agagagaactgtcatcaaagttgttaaaaatggttgttcaaatatcatt 278  Q
    |||||||  ||||| ||||||||||||||||||||||  ||||||||||    
T  35414608 agagagagttgtcaccaaagttgttaaaaatggttgtcaaaatatcatt 35414656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 37275068 - 37275104
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||| | ||||||||||||||||||||||||||||    
T  37275068 aaagttataaaaaatggttgttcaaatatcatttctc 37275104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 43893310 - 43893254
Alignment:
Q  230 agagagaactgtcatcaaagttgtta-aaaatggttgttcaaatatcatttctctat 285  Q
    ||||| || |||||| |||||||| | ||||||| ||||||||||||||||||||||    
T  43893310 agagaaaattgtcataaaagttgtgacaaaatggatgttcaaatatcatttctctat 43893254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 48983712 - 48983740
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  48983712 aaaaatggttgttcaaatatcatttctct 48983740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 51168700 - 51168656
Alignment:
Q  239 tgtcatcaaagttgttaa-aaatggttgttcaaatatcatttctc 282  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||    
T  51168700 tgtcataaaagttgttagcaaatggttgttcaaatatcatttctc 51168656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 1156757 - 1156720
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  1156757 aaagttgtaaaaaatggttgttcaaatatcatttctct 1156720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 22079598 - 22079635
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| |||||||||||||||||||||||||||||    
T  22079598 aaagttgtaaaaaatggttgttcaaatatcatttctct 22079635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 8098630 - 8098666
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8098630 aaagttgtaaaaaatggttgttcaaatatcatttctc 8098666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 25811873 - 25811909
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  25811873 aaagttgtaaaaaatggttgttcaaatatcatttctc 25811909  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 34047423 - 34047387
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  34047423 aaagttgtaaaaaatggttgttcaaatatcatttctc 34047387  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 20712103 - 20712064
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctctat 285  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  20712103 aaagttgttaaaaatagttgtacaaatatcatttctctat 20712064  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 32316963 - 32317001
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  32316963 aaagttgtaaaaaatagttgttcaaatatcatttctcta 32317001  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 552828 - 552791
Alignment:
Q  247 aagttgttaaaaatggttgttcaaatatcatttctcta 284  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  552828 aagttgtaaaaaatgtttgttcaaatatcatttctcta 552791  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 17551423 - 17551451
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  17551423 aaaaatggttgttcaaatatcatttctct 17551451  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 18737590 - 18737626
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||| | ||||||||||||||||||||||||||||    
T  18737590 aaagttataaaaaatggttgttcaaatatcatttctc 18737626  T

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Target: scaffold0098 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 49338 - 49294
Alignment:
Q  239 tgtcatcaaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||| |||||| | |||||||||||||||||||||||||||||    
T  49338 tgtcataaaagttataaaaaatggttgttcaaatatcatttctct 49294  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 366330 - 366294
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  366330 aaagttgttaaaaatggttgtacaaatatcatttctc 366294  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 22719476 - 22719440
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  22719476 aaagttgtaaaaaatggttgttcaaatatcatttctc 22719440  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 27325794 - 27325758
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  27325794 aaagttgtaaaaaatggttgttcaaatatcatttctc 27325758  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 31249559 - 31249595
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  31249559 aaagttgtaaaaaatggttgttcaaatatcatttctc 31249595  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 43397817 - 43397781
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||||||||||||||||||||||||    
T  43397817 aaagttgtaaaaaatggttgttcaaatatcatttctc 43397781  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 282
Target Start/End: Original strand, 4054322 - 4054357
Alignment:
Q  247 aagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    ||||||| ||||||||||||||||||||||||||||    
T  4054322 aagttgtaaaaaatggttgttcaaatatcatttctc 4054357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 283
Target Start/End: Original strand, 34810678 - 34810713
Alignment:
Q  248 agttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||| |||||||||||||||||||||||||||||    
T  34810678 agttgtaaaaaatggttgttcaaatatcatttctct 34810713  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 286
Target Start/End: Complemental strand, 16487636 - 16487606
Alignment:
Q  256 aaaatggttgttcaaatatcatttctctata 286  Q
    |||||||||||||||||||||||||||||||    
T  16487636 aaaatggttgttcaaatatcatttctctata 16487606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 33100503 - 33100541
Alignment:
Q  246 aaagttgtta-aaaatggttgttcaaatatcatttctct 283  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  33100503 aaagttgttataaaatggttgttcaaatatcatttctct 33100541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 33107894 - 33107948
Alignment:
Q  239 tgtcatcaaagttgttaaaaa-tggttgttcaaatatcatttctctatatttaaa 292  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||| || |||||    
T  33107894 tgtcataaaagttgtcaaaaagtggttgttcaaatatcatttctctttaattaaa 33107948  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Original strand, 5849610 - 5849639
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctcta 284  Q
    ||||||||||||||||||||||||||||||    
T  5849610 aaaaatggttgttcaaatatcatttctcta 5849639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 24479272 - 24479235
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||| | |||||||||||||||||||||||||||||    
T  24479272 aaagttatcaaaaatggttgttcaaatatcatttctct 24479235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 37449460 - 37449497
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctct 283  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  37449460 aaagttgtaaaaaatggttgttgaaatatcatttctct 37449497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Original strand, 42733607 - 42733636
Alignment:
Q  253 ttaaaaatggttgttcaaatatcatttctc 282  Q
    ||||||||||||||||||||||||||||||    
T  42733607 ttaaaaatggttgttcaaatatcatttctc 42733636  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 5772016 - 5772044
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  5772016 aaaaatggttgttcaaatatcatttctct 5772044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 7271888 - 7271852
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||||||||||  ||||||||||||||||||||    
T  7271888 aaagttgttaaaaattattgttcaaatatcatttctc 7271852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 9048350 - 9048394
Alignment:
Q  246 aaagttgtta-aaaatggttgttcaaatatcatttctctatattt 289  Q
    |||||||||| ||||||||| | ||||||||||||||||||||||    
T  9048350 aaagttgttagaaaatggttatacaaatatcatttctctatattt 9048394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 281
Target Start/End: Original strand, 10839516 - 10839552
Alignment:
Q  246 aaagttgttaaaaat-ggttgttcaaatatcatttct 281  Q
    ||||||||||||||| |||||||||||||||||||||    
T  10839516 aaagttgttaaaaattggttgttcaaatatcatttct 10839552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 28772168 - 28772196
Alignment:
Q  255 aaaaatggttgttcaaatatcatttctct 283  Q
    |||||||||||||||||||||||||||||    
T  28772168 aaaaatggttgttcaaatatcatttctct 28772196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 32501231 - 32501267
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttctc 282  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  32501231 aaagttgtaaaaaatgattgttcaaatatcatttctc 32501267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 35559 - 35524
Alignment:
Q  246 aaagttgttaaaaatggttgttcaaatatcatttct 281  Q
    |||||||| |||||||||||||||||||||||||||    
T  35559 aaagttgtaaaaaatggttgttcaaatatcatttct 35524  T

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Target: scaffold0257 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 24007 - 23974
Alignment:
Q  256 aaaatggttgttcaaatatcatttctctatattt 289  Q
    |||||||||||||||||||||||||||| |||||    
T  24007 aaaatggttgttcaaatatcatttctctttattt 23974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 15221 - 15269
Alignment:
Q  245 caaagttgttaaaaa-tggttgttcaaatatcatttctctatatttaaa 292  Q
    ||||||||||||||| || |||| ||||||||||||||||| |||||||    
T  15221 caaagttgttaaaaagtgattgtacaaatatcatttctctaaatttaaa 15269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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