View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1581-INSERTION-8 (Length: 242)
Name: NF1581-INSERTION-8
Description: NF1581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1581-INSERTION-8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 3479951 - 3479742
Alignment:
| Q |
7 |
aaatacaagtactatccaaatgttgttgagttagcatccaactgcgacatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaacc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3479951 |
aaatacaagtactatccaaatgttgttgagttagcatccaactgcgacatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaacc |
3479852 |
T |
|
| Q |
107 |
gggaggtcatcaatgcacttggtccgaaaggtttccttattaacatcggccgaggtaagcatgttgatgagccagagctggtctctgcactccttgaagg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3479851 |
gggaggtcatcaatgcacttggtccgaaaggtttccttattaacatcggccgaggtaagcatgttgatgagccagagctggtctctgcactccttgaagg |
3479752 |
T |
|
| Q |
207 |
tcgtttgggt |
216 |
Q |
| |
|
|||||||||| |
|
|
| T |
3479751 |
tcgtttgggt |
3479742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 3519559 - 3519350
Alignment:
| Q |
7 |
aaatacaagtactatccaaatgttgttgagttagcatccaactgcgacatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaacc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
3519559 |
aaatacaagtactatccaaatgttgttgagttagcatccaactgcgacatactagtcgttgcctgctctcttacagatgaaacccatcacatcatcaacc |
3519460 |
T |
|
| Q |
107 |
gggaggtcatcaatgcacttggtccgaaaggtttccttattaacatcggccgaggtaagcatgttgatgagccagagctggtctctgcactccttgaagg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3519459 |
gggaggtcatcaatgcacttggtccgaagggtttcctaattaacatcggtcgaggtaagcatgttgatgagccagagctggtctctgcactgcttgaagg |
3519360 |
T |
|
| Q |
207 |
tcgtttgggt |
216 |
Q |
| |
|
|||||||||| |
|
|
| T |
3519359 |
tcgtttgggt |
3519350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 3523107 - 3522898
Alignment:
| Q |
7 |
aaatacaagtactatccaaatgttgttgagttagcatccaactgcgacatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaacc |
106 |
Q |
| |
|
||||||||||||||||||| |||||||||| | ||||||||||| || |||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
3523107 |
aaatacaagtactatccaagtgttgttgagcttgcatccaactgtgatatactagttgttgcctgcccccttacagaggaaacccatcacatcatcaacc |
3523008 |
T |
|
| Q |
107 |
gggaggtcatcaatgcacttggtccgaaaggtttccttattaacatcggccgaggtaagcatgttgatgagccagagctggtctctgcactccttgaagg |
206 |
Q |
| |
|
|||||||||| || ||||| ||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3523007 |
gggaggtcattaacgcactcggtccaaagggtttcctaattaacatcggtcgaggtaagcatgttgatgagccagagctggtctctgcactgcttgaagg |
3522908 |
T |
|
| Q |
207 |
tcgtttgggt |
216 |
Q |
| |
|
|||||||||| |
|
|
| T |
3522907 |
tcgtttgggt |
3522898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 3536851 - 3537060
Alignment:
| Q |
7 |
aaatacaagtactatccaaatgttgttgagttagcatccaactgcgacatactagttgttgcctgctcacttacagaggaaacccatcacatcatcaacc |
106 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
3536851 |
aaatacaagtactatccaagccttattgagttagcatccaactgcgacatactggttgttgcctgccctcttacagaggaaactcatcacatcatcaacc |
3536950 |
T |
|
| Q |
107 |
gggaggtcatcaatgcacttggtccgaaaggtttccttattaacatcggccgaggtaagcatgttgatgagccagagctggtctctgcactccttgaagg |
206 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
3536951 |
gggaggtcattaatgcacttggtccgaagggtgtcctaattaacattggccgaggtaagcatgttgatgagccagagctcgtctctgcattgcttgaagg |
3537050 |
T |
|
| Q |
207 |
tcgtttgggt |
216 |
Q |
| |
|
|||||||||| |
|
|
| T |
3537051 |
tcgtttgggt |
3537060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4007 times since January 2019
Visitors: 1238