View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1581-INSERTION-9 (Length: 648)
Name: NF1581-INSERTION-9
Description: NF1581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1581-INSERTION-9 |
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Alignment Details
Target: chr4 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 8 - 617
Target Start/End: Original strand, 36902859 - 36903468
Alignment:
| Q |
8 |
attgggacagtgcttgctggaactatcaacattggtgtagcacggtggttgctagactccgtcaaaaacatatgtaataaagatcttcttcccaaaggca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36902859 |
attgggacagtgcttgctggaactatcaacattggtgtagcatggtggttgctagactcagtcaaaaacatatgtaataaagatcttcttcccaaaggca |
36902958 |
T |
|
| Q |
108 |
gtccatggacatgtcccaatgatcgtgttttcttcgatgcatcggttgtttggggtttagtaggacctaagaggatctttggttctcttggagaatactc |
207 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36902959 |
gtccatggacatgtcccagtgatcgtgttttcttcgatgcatcggttgtttggggtttagtaggacctaagaggatctttggttctcttggagaatactc |
36903058 |
T |
|
| Q |
208 |
aacattgaactggtttttccttggaggtgcaatagggcccatactagtttggctattgcacaaggcattcccaaaacagtcatggattccattgatcaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36903059 |
aacattgaactggtttttccttggaggtgcaatagggcccatactagtttggctattgcacaaggcattcccaaaacagtcatggattccattgatcaat |
36903158 |
T |
|
| Q |
308 |
cttccggtactcctgggagcaacaggaatgatgccaccagcaacagcattgaactacaattcatggattatagttggaaccattttcaacttctttatct |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36903159 |
cttccggtactcctgggagcaacaggaatgatgccaccagcaacagcattgaactacaattcatggattatagttggaaccattttcaacttctttatct |
36903258 |
T |
|
| Q |
408 |
tccgttacagaaagaaatggcggcagagatacaactatgttttatcagcagcacttgatgcaggggtggcttttatggctgtactgctttacttggcatt |
507 |
Q |
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| T |
36903259 |
tccgttacagaaagaaatggtggcagagatacaactatgttttatcagcagcacttgatgcaggggtggcttttatggctgtactgctttacttggcatt |
36903358 |
T |
|
| Q |
508 |
aggactggaaaatgtgagtctcaattggtggggtactgctggggagcattgtcctttggcagcttgcccaacagctaagggtatagtggttgatggtagc |
607 |
Q |
| |
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||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36903359 |
aggtctggaaaatgtgagtctcaattggtggggaactgctggggagcattgtcctttggcagcttgcccaacagctaagggtatagtggttgatggttgc |
36903458 |
T |
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| Q |
608 |
actgtcttct |
617 |
Q |
| |
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||||||||| |
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| T |
36903459 |
cctgtcttct |
36903468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 18 - 501
Target Start/End: Complemental strand, 2170961 - 2170478
Alignment:
| Q |
18 |
tgcttgctggaactatcaacattggtgtagcacggtggttgctagactccgtcaaaaacatatgtaataaagatcttcttcccaaaggcagtccatggac |
117 |
Q |
| |
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||||||| ||||| ||||||||||| || ||| |||||||||| ||||||| | || ||||| || | ||||| ||||| |||||||||| ||||| |
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| T |
2170961 |
tgcttgccggaaccatcaacattggggtggcatggtggttgctgaactccgttgagaatatatgccatgatgatctccttccagaaggcagtccctggac |
2170862 |
T |
|
| Q |
118 |
atgtcccaatgatcgtgttttcttcgatgcatcggttgtttggggtttagtaggacctaagaggatctttggttctcttggagaatactcaacattgaac |
217 |
Q |
| |
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|||||| ||| ||||||||||||||||| |||||| |||||||| | |||||||| || | |||||||||||| ||| | ||| || |||| |
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| T |
2170861 |
atgtccaggtgaccgtgttttcttcgatgcttcggttatttggggtctggtaggaccaaaacgaatctttggttctaaaggaaactacagtgcaatgaat |
2170762 |
T |
|
| Q |
218 |
tggtttttccttggaggtgcaatagggcccatactagtttggctattgcacaaggcattcccaaaacagtcatggattccattgatcaatcttccggtac |
317 |
Q |
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||||||||| ||||||||||||| || || ||| | |||||||| ||||| || ||||| || | ||||||||||||| | ||||| |||||||| || | |
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| T |
2170761 |
tggtttttcattggaggtgcaattggaccaataattgtttggcttttgcataaagcatttcctagacagtcatggattgctttgattaatcttccagttc |
2170662 |
T |
|
| Q |
318 |
tcctgggagcaacaggaatgatgccaccagcaacagcattgaactacaattcatggattatagttggaaccattttcaacttctttatcttccgttacag |
417 |
Q |
| |
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|||| |||||||| | ||||||||||||||||||| |||||||||||||||| |||||| | || || || |||||||| ||||| | ||||||||||| |
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| T |
2170661 |
tccttggagcaactgcaatgatgccaccagcaacaccattgaactacaattcttggatttttgtcgggacgattttcaatttcttcgttttccgttacag |
2170562 |
T |
|
| Q |
418 |
aaagaaatggcggcagagatacaactatgttttatcagcagcacttgatgcaggggtggcttttatggctgtactgctttactt |
501 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||||||||||||||| | || || ||||||||| |||| || |||||||| |
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| T |
2170561 |
aaagaaatggtggcagagatacaactatgttctatcagcagcacttgatactggagttgcttttatgactgttcttctttactt |
2170478 |
T |
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