View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15810_low_2 (Length: 350)
Name: NF15810_low_2
Description: NF15810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15810_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 10995324 - 10995003
Alignment:
| Q |
13 |
catcagcaaaatccctagcatgccaaacacaagatttctcattctcatcatactcttgaacgctcatcgtaggtataatgagatgattagcgcagatatt |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10995324 |
catcagcaaaatccctggcatgccaaacacaagatttctcattctcatcatactcttgaacgctcatcgtaggtataatgagatgattagcgcagatatt |
10995225 |
T |
|
| Q |
113 |
gagtgtcttcgattgcctcatgagaagcctcactttaccagtaaccttatgcttcaagaacttcaccgtaccagcacctctctccttccactgatttcca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10995224 |
gagtgtcttcgattgcctcatgagaagcctcactttaccagtaaccttatgcttcaagaacttcaccgtaccagcacctctctccttccactgatttcca |
10995125 |
T |
|
| Q |
213 |
tctttatcgaaacggtaaagcttcgatttgagatctagaatggattcttcgtcttcttcaccggtagtgacggcaacttcttggagttggacgatcggag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10995124 |
tctttatcgaaacggtaaagcttcgatttgagatctagaatggattcttcgtcttcttcaccggtagtgacggcaacttcttggagttggacgatcggag |
10995025 |
T |
|
| Q |
313 |
cgacttgtgctcgggtgtcttc |
334 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10995024 |
cgacttgtgctcgggtgtcttc |
10995003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 91 - 225
Target Start/End: Original strand, 2237579 - 2237713
Alignment:
| Q |
91 |
tgagatgattagcgcagatattgagtgtcttcgattgcctcatgagaagcctcactttaccagtaaccttatgcttcaagaacttcaccgtaccagcacc |
190 |
Q |
| |
|
||||||||||||| || || || || || |||||||||||||| |||||| ||||||||||||||| |||||||||||||||| |||| |||||||||| |
|
|
| T |
2237579 |
tgagatgattagcacaaatcttaagggttttcgattgcctcataagaagcttcactttaccagtaaacttatgcttcaagaacgtcactataccagcacc |
2237678 |
T |
|
| Q |
191 |
tctctccttccactgatttccatctttatcgaaac |
225 |
Q |
| |
|
| |||||||| || |||||||||||| || ||||| |
|
|
| T |
2237679 |
tatctccttctaccgatttccatcttaattgaaac |
2237713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 7e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 91 - 242
Target Start/End: Complemental strand, 44025335 - 44025184
Alignment:
| Q |
91 |
tgagatgattagcgcagatattgagtgtcttcgattgcctcatgagaagcctcactttaccagtaaccttatgcttcaagaacttcaccgtaccagcacc |
190 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
44025335 |
tgagatgattagcgcagatcttgagtgtcttcgattgcctcatgagaagcctcactttaccagtaaccttatgcttcaagaacttgaccgtcccagcacc |
44025236 |
T |
|
| Q |
191 |
tctctccttccactgatttccatctttatcgaaacggtaaagcttcgatttg |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44025235 |
tctctccttccactgatttccatctttatcgaaacggtaaagctttgatttg |
44025184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 44025103 - 44025012
Alignment:
| Q |
243 |
agatctagaatggattcttcgtcttcttcaccggtagtgacggcaacttcttggagttggacgatcggagcgacttgtgctcgggtgtcttc |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
44025103 |
agatctagaatggattcttcgtcttcttcaccggtagtgacggcaacttcttggagttggacaatcggagcgacttgtgctccggtgtcttc |
44025012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 44025501 - 44025424
Alignment:
| Q |
13 |
catcagcaaaatccctagcatgccaaacacaagatttctcattctcatcatactcttgaacgctcatcgtaggtataa |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |
|
|
| T |
44025501 |
catcagcaaaatccctagcatgccaaacacaagatttctcattcccagcatgctcttgaacgctcatcgtaggtataa |
44025424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 241
Target Start/End: Original strand, 34807433 - 34807583
Alignment:
| Q |
91 |
tgagatgattagcgcagatattgagtgtcttcgattgcctcatgagaagcctcactttaccagtaaccttatgcttcaagaacttcaccgtaccagcacc |
190 |
Q |
| |
|
||||||||||||| || || || || || |||||||||||||| |||||| | ||||||||||||| |||||||||||||||| | || |||||||||| |
|
|
| T |
34807433 |
tgagatgattagcacaaatcttaagggttttcgattgcctcataagaagctttactttaccagtaaacttatgcttcaagaacgttactataccagcacc |
34807532 |
T |
|
| Q |
191 |
tctctccttccactgatttccatctttatcgaaacggtaaagcttcgattt |
241 |
Q |
| |
|
| |||||||| || |||||||||||| || |||||| || | ||||||||| |
|
|
| T |
34807533 |
tatctccttctaccgatttccatcttaattgaaacgttacaacttcgattt |
34807583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 208
Target Start/End: Original strand, 14707441 - 14707558
Alignment:
| Q |
91 |
tgagatgattagcgcagatattgagtgtcttcgattgcctcatgagaagcctcactttaccagtaaccttatgcttcaagaacttcaccgtaccagcacc |
190 |
Q |
| |
|
||||||||||||| ||||| || || ||||| ||||| ||||| | |||||| ||||| |||||||||||||||||||| ||||| || || || || || |
|
|
| T |
14707441 |
tgagatgattagcacagatcttaagagtctttgattgtctcataacaagcctaacttttccagtaaccttatgcttcaaaaacttaacagttcctgcccc |
14707540 |
T |
|
| Q |
191 |
tctctccttccactgatt |
208 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
14707541 |
tcgttccttccattgatt |
14707558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 14707056 - 14707113
Alignment:
| Q |
13 |
catcagcaaaatccctagcatgccaaacacaagatttctcattctcatcatactcttg |
70 |
Q |
| |
|
|||||||||| ||| | || |||||||||||||||||||||||| || ||| |||||| |
|
|
| T |
14707056 |
catcagcaaagtccttcgcgtgccaaacacaagatttctcattcccagcatgctcttg |
14707113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University