View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15810_low_3 (Length: 321)
Name: NF15810_low_3
Description: NF15810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15810_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 10559547 - 10559847
Alignment:
| Q |
1 |
cttgtgtatggatgcaaaatcaaattgcaaagaaaaaagtggtgcatgagcgattgcaagtatcacaacaacaaactaggatgagtcaaaatgaatctaa |
100 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10559547 |
cttgcgtatggatgcaaaatcaaattgcaaaaaaaaaagtggtgcatgagcgattgcaagtatgacaacaacaaactaggatgagtcaaaatgaatctaa |
10559646 |
T |
|
| Q |
101 |
tatttgaaatttggcgtgtgaacgcgatcgccaacacgaaaaacggatccattcacttcaaaccgagcacgacgaaagtgacaacaacaagcataaacga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10559647 |
tatttgaaatttggcgtgtgaacgcgatcgccaacacgaaaa-cggatccattcaccacaaaccgagcacgacgaaagtgaaaacaacaagcataaacga |
10559745 |
T |
|
| Q |
201 |
ctatgaggcaacctgagatgcagaagagcatccagttcgtgaagccttggctcttttgagcaataaaaaccagagacaaaaccttcagcgctcccataaa |
300 |
Q |
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||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
10559746 |
ctatgaggcaacctgagatgcagaagaacatcaagctcgtgaagccttggctcttttgagcaataaaaaccagaggcaaaaccttcggcgctcccataaa |
10559845 |
T |
|
| Q |
301 |
cc |
302 |
Q |
| |
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|| |
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| T |
10559846 |
cc |
10559847 |
T |
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