View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15810_low_4 (Length: 303)
Name: NF15810_low_4
Description: NF15810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15810_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 8355205 - 8354909
Alignment:
| Q |
14 |
agagggattcagacaatcttaattgttcgtcttgattctaaatttaagttttaatttactttcaatttgtaaaccaacttggaatgcaaacccctgaaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8355205 |
agagggattcagacaatcttaattgttcgtcttgattctaaatttaagttttaatttactttcaatttgtaaaccaacttggaatgcaaacccctgaaat |
8355106 |
T |
|
| Q |
114 |
ttatatttgtatgacttataaaacatataaaatcatcctttttgag------------------tactataagaaagggaccaaaaccgatagtttttaa |
195 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8355105 |
ttatatttatatgacttataaaacatataaaatcatcctttttgagtttaaaaaaaaataaaaatactataagaaagggaccaaaaccgatagtttttaa |
8355006 |
T |
|
| Q |
196 |
aatgaatgaccaagtactccattattaaaggagcaatccgagta--attca-----aggataggatagataagtaatcttattaaaatagatagact |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8355005 |
aatgaatgaccaagtactccattattaaaggaccaatccgagtaatattcaaggataggataggatagataagtaatcttattaaaatagatagact |
8354909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University